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Detailed information on CNT3085000


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSM4|CHM1B_ARATH, E-value = 5e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Vigna radiataSetaria viridis4.4555.0791.2125forward
CNT30513024Vigna radiataJuglans regia8.5132.0887.03239forward
CNT30306600Vigna radiataTriticum aestivum6.3756.4785.47179forward
CNT30254428Vigna radiataAvena sativa8.1242.4685.09228forward
CNT30669382Vigna radiataTriticum dicoccoides8.6240.686.78242forward
CNT3060118Vigna radiataArabidopsis lyrata6.0557.8283.53170forward
CNT30141866Vigna radiataLolium perenne19.0888.1681.16536forward
CNT30347540Vigna radiataEragrostis tef19.0845.3183.77536forward
CNT30368840Vigna radiataSorghum bicolor7.3757.6688.41207forward
CNT30370517Vigna radiataOryza glumipatula7.5542.4889.15212forward
CNT30571602Vigna radiataVitis vinifera20.3651.8679.02572forward
CNT30705067Vigna radiataPrunus avium11.8234.0583.43332forward
CNT30644153Vigna radiataCannabis sativa9.437.7180.3264forward
CNT30116955Vigna radiataOryza nivara19.0867.9382.65536forward
CNT30111719Vigna radiataFicus carica16.5251.3387.07464forward

Expression of CNT3085000

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MASFSMCGIIDWAGLLPRKYSLTLSALPFSHG

>peptide 2 (47 aa)
MNQNGIVDDWENNISFGSSEHFLLLPDILNSIIHRILTRETVNGGDS*

>peptide 3 (39 aa)
MIWFISFSVFPIVTDSLSLGFFDSQNSEREIEEEWNFEF*

>peptide 4 (84 aa)
MMLVFYRKNASPIHFIASGMILHEIMFNIGKRCKTYNPIVPVEIQWRVLNEFGFLLSFGYCSCTSRESGLVFKAVPDINLISFW*

>peptide 5 (48 aa)
MDKSLQNSHGFVIHRRRYRSFHLQLILIKYFSCLAYSRQFRGTSGSIQ*

>peptide 6 (88 aa)
MRLLTSPSGVEREVDPAMALSMNSAWTSMFTNCFSNWSMVSDIFCRFPVASDDSSDFTMFPIDLLIVAIFACVSSRATTASRREAKRR*

>peptide 7 (31 aa)
RGVGRKSLFFILVWTASAHFVCMGPMKKPNR*

>peptide 8 (32 aa)
MFVCRCFVLCSFPLRSHFFFLDVSLPIRKPSN*

Sequence

>CNT3085000
TAGGGGCGTAGGAAGAAAATCTCTATTCTTCATTCTTGTGTGGACAGCTTCGGCCCATTTTGTTTGTATGGGCCCCATGAAAAAGCCCAACAGATAAGCA
GACAGAACTAGATGTTTGTTTGTCGGTGTTTTGTCCTTTGTTCATTTCCTTTACGTTCTCACTTTTTCTTTCTGGACGTGTCTCTTCCTATTCGTAAACC
CAGCAATTAATTTGCTTAATTTCTGTTATTATCACTATATGTATCGTATGTCCGTGTGATCAATGTTCCTAATCTTGAAAAGTTCAATCCTGAAGTTATT
TATTGAAAAAACTTTATTTTGTATCTAAGAATGTGTTTTTCATTTAACTCTATAGTTATGTTTGGTTGTCTTCTTTGATAAATACGACGTTGGAGTTTCA
AGGGACTAATCTTAGATTGTATTGGAATTCTCGTCAACAACATGCTAAGGAGACATGAAGACTGGTTTAGAAATTAGCAGAAAATTGTACTGTGGAATAG
TACAACAACATACGAATTGTCACTCTGTCTTCTTTTATTGATGAATCAAAATGGAATAGTGGATGACTGGGAAAACAATATATCATTTGGCTCTTCTGAG
CACTTTCTATTGTTGCCTGACATTCTGAATTCCATTATACACCGAATATTAACTAGAGAGACTGTCAATGGTGGGGACAGCTAATATATCACAAATTGTT
ATCATTTGAAATGATCGATTAGACATGTGTAGTTATTATTTGTATAGTGTAATTCGTTGATGGACTGTGCTTTATTGAATGGCAAAAATGATATCTTTTT
GAAATTGTTGGAATCAGATGCCGCATAATTGTCACTAATTTTGCATTGTAATTAGTAATTGCGCTCTCGATGTAAAGAATATTTGTATACATTTGAAATA
TTTGCATTTGGCATTGGCAAGTTTCCATAGGAAGTTAATTGCCCTTGAGGTAAAGCAACAGAGGATCCTTATTGTTTTTCCTTTTATAATAATAGCAAGT
CTAATACATGAAAATATGAAGTACCAGTGCGTAGTGCTGTTATATGGATAAGTCGTTACAAAACTCTCATGGTTTTGTAATTCACAGAAGACGCTATAGA
AGCTTCCATCTGCAACTCATTCTTATAAAGTATTTTTCCTGTCTGGCTTATTCTAGACAGTTTAGAGGAACATCCGGCAGTATTCAGTAAGTTTAGCAGA
AGTTGGTAAATGATGTTGGTGTTTTATAGAAAAAACGCTAGTCCAATACATTTTATAGCTTCAGGCATGATACTCCACGAAATCATGTTTAATATAGGTA
AAAGATGCAAAACCTACAACCCAATAGTTCCAGTTGAGATACAATGGAGAGTCTTAAATGAATTTGGATTCTTGCTGAGCTTTGGGTACTGTTCTTGTAC
CAGCAGAGAATCTGGACTGGTCTTCAAAGCAGTACCAGACATAAACTTAATCAGCTTCTGGTGACAATAAGGAAGAACATGCTCATGTGCAGTATAGCTC
CCTTTTGTGGCCATGTTGGTTCTGGCTCATTTCTCTGACCTATGTTTATTCGTTCTGCTTCGCTGTTAATGTAAAACAGTCTAGTCTACATACGACACCT
TATCTCTGGGATTTACATATAAACTATTTCAATGTTTGCCTCTCATTTGAAAAACATGAAATGCTATCTAATATCATAATTTTTGGATTCCAAACCAAAA
TTTGAGGTCATTTTACATCAACAAGCATATTATCACCAGATGTTATTTGAAAAGACAAATACAAGCATTGTATAAACGTATTAAGTATTCACACGATGAG
ACTAACATAAAGAGAAGTCATAATACCACTCAAGAGTAAAGACCAAATAACAACCGAATTCAGATTAATATACAGAAAACATATAGCATTGCATATTCAG
CTATGGAAAAGGATAGTAACAGATGATGATGATGATAGTGACGATGATGCCACAGTATTAATTGATTAATTAATTACGTTAACCTCTAGCCTTGAGTTCG
GCGAGGCGGCGAGACAAGTCGTCCTCGTCGACCTTGTCGGCTTCCTTGGTCGGAACGGCGTGAGCGGCGGGCTGAGGGAGGCCGACGGAGACCTCGAGAC
CGTAGTCGTCGGCGACCTGCTGCATGAGGCTGTTGACCTCTCCTTCGGGAGTGGAGAGAGAGGTCGATCCAGCCATGGCGCTCTCCATGAACTCCGCCTG
GACCTCCATGTTCACGAACTGCTTCTCGAACTGGTCCATGGTCTCCGACATCTTCTGCAGGTTCCCGGTAGCCAGCGATGACTCCAGCGATTTCACGATG
TTTCCCATCGACTTGCTGATAGTCGCCATCTTCGCCTGCGTGTCAAGCCGCGCCACCACGGCGTCGAGGCGTGAGGCCAAGCGGAGGTAATTCATCTGCT
CGGTGCGCTTCCGGATGGCGTTTTCCGCGTAGATCCGCGCGCCGTCCATGTTGCCTTTCTCGATCGCCTTCTTCACCTTGAGCTTCTCCGCCTTCTCCTC
CTTCTCGCACTTGCGCGATTGACGCTGTAGCGACTTTGACGTGAATTTCAACTCCATGATCTGGTTCATCAGCTTCTCCGTGTTCCCCATCGTCACCGAT
TCGCTTAGCTTAGGGTTTTTCGATTCCCAAAATTCAGAAAGAGAAATAGAAGAGGAATGGAATTTCGAATTTTGAGTTAATTTGAAAGAGAGACCTTTCT
TACGTTCCTCTTTATGGCTTCTTTTTCTATGTGTGGAATAATTGACTGGGCTGGGCTCCTTCCACGAAAATACTCTCTCACACTCTCCGCGTTACCCTTC
TCACACGGC