Detailed information on CNT3082343


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LLR7|NLTP3_ARATH, E-value = 4e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377152Brassica junceaArabidopsis thaliana45.7651.2286.24189forward
CNT30544514Brassica junceaBrassica napus74.3364.983.39307forward
CNT30313961Brassica junceaCamelina sativa43.8350.8483.98181forward

Expression of CNT3082343

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLTPHFPGRPAARLGLRPATPFAADCRHLHAS*

>peptide 2 (33 aa)
MHTVNTRHVKNLRAKAICVFPFFLCFCDRNMDI*

Sequence

>CNT3082343
GTCGCAGTTAGTGCTCATGGAGATGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGACCAGCGGCTAGACTTGGGTTGAGACCAGCAACGCCCTTT
GCAGCGGACTGTAGGCATTTGCATGCTTCTTGACGGTCTGGTGTGGTTTGAGCCATACCGTTCAACTTAGTGACTCCAGCACAGCAGGGAGGAGGAACCT
CCCCACCTTTAGATAGGTAAGTGGCACATGGAGCCAAGTTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGATGCAACTATGCACACTGTCAA
TACAAGGCATGTGAAGAACCTTAGAGCCAAAGCCATTTGTGTTTTTCCTTTCTTTCTTTGTTTTTGTGATAGAAATATGGATATTTAGCTGAGTTGTTTC
TAATTATGGTTTG