CANTATAdb - search

Detailed information on CNT3079435

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30478095	Brassica juncea	Arabidopsis halleri	14.26	20.75	95.45	88	forward

Expression of CNT3079435

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KTKYSWTWLQSKVLGLNGPYWAYVLESPLNKSV*

Sequence

>CNT3079435
GAAGACAAAATATTCGTGGACATGGTTACAAAGTAAGGTTTTAGGCCTTAATGGGCCTTATTGGGCCTATGTATTAGAAAGCCCATTAAATAAAAGTGTC
TAGGGGTTTGAGGCATATTAAAAAAGGTAAGCTGACCATCAGAATCGATTTAGCTACTCCGCCGCTCCTTCTCATTTTCGTAGATCTGAACACCAACCAG
AGGAGGGAAAGGGTGATTCTTCTGCGACAACCAGCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACA
GCGATCTAAGTAGTTTCGGAACCTGTTTTGTCTCTTTTTCTTTTAGACCGACATTTGTGAGAGTTTTGTTGGTTTTGTTTCTGAATTTGAATGTTTTTGT
TGGACCATTCTATCTTTTCAATCAGAATACTTATCTTTACTACATGAAAGAATCCACGACTGGGTTCTGGATTTGTTCCTTTTATTTTCTTCAATCTGCT
TATAATCGTGGTTAGTTGAATGATGATGATCTTATACTTGTGCCTGCGTGCGTAGGATTAGTTTTCCTCGAACATTTGATATGATGAACAATGTAACAAA
TGCTTGTTACGCGTTTG