Detailed information on CNT3079106


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515171Brassica junceaJuglans regia23.66.6710063reverse complement
CNT30125558Brassica junceaPhyscomitrium patens24.344.4986.1565forward
CNT30176867Brassica junceaSecale cereale25.096.3710067forward
CNT30284406Brassica junceaTriticum aestivum23.65.3610063reverse complement
CNT30565764Brassica junceaActinidia chinensis22.854.6693.4461forward
CNT30544956Brassica junceaBrassica napus25.097.0895.5267forward
CNT30237803Brassica junceaBrassica oleracea23.66.0910063reverse complement
CNT30435316Brassica junceaAegilops tauschii25.093.8310067reverse complement
CNT30657199Brassica junceaTriticum dicoccoides24.728.1998.4866reverse complement
CNT3061606Brassica junceaArabidopsis lyrata28.0923.158875reverse complement
CNT30260188Brassica junceaBrassica rapa23.64.9290.4863forward
CNT30461595Brassica junceaSaccharum spontaneum20.226.792.5954reverse complement
CNT3012850Brassica junceaZea mays20.224.4592.5954reverse complement
CNT30214058Brassica junceaHelianthus annuus24.3424.6210065reverse complement
CNT30680400Brassica junceaTriticum urartu21.351.1189.4757reverse complement
CNT30154097Brassica junceaPrunus persica23.62.7510063forward
CNT30107453Brassica junceaOryza longistaminata23.2223.498.3962forward
CNT3035140Brassica junceaCucumis melo24.3426.4298.4665forward
CNT30112149Brassica junceaFicus carica23.68.0398.4163reverse complement

Expression of CNT3079106

Peptides detected in this lncRNA

>peptide 1 (51 aa)
LCDVILKDERDTGQDRECGHSPLTTFVSFHFGKISFGCYPPICIFIIAIQS*

>peptide 2 (80 aa)
MSGTQAKIESVGTPHLLLLFLFILEKSLLVAIPQYVSLLLLSKVNAANSINERSQIKKIKSPTVGLEPTTTRLRALRSTN*

Sequence

>CNT3079106
TTTGTGTGATGTAATCTTAAAAGATGAGCGGGACACAGGCCAAGATAGAGAGTGTGGGCACTCCCCACTTACTACTTTTGTTTCTTTTCATTTTGGAAAA
ATCTCTTTTGGTTGCTATCCCCCAATATGTATCTTTATTATTGCTATCCAAAGTTAATGCAGCAAACAGTATTAATGAAAGGAGTCAAATAAAAAAAATT
AAATCGCCCACCGTGGGGCTCGAACCCACGACCACAAGGTTAAGAGCCTTGCGCTCTACCAACTGAG