Detailed information on CNT307812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 4e-114

BLAST vs NONCODE:
NONORUT002037, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404904Zea maysBeta vulgaris19.0128.5580.12161forward
CNT30297939Zea maysTriticum aestivum22.3148.9682.01189forward
CNT30223652Zea maysHordeum vulgare33.0638.8980.36280forward
CNT30401458Zea maysTriticum turgidum22.247.4781.91188forward
CNT30240671Zea maysAvena sativa54.0758.6478.82458forward
CNT30664982Zea maysTriticum dicoccoides55.8456.2478.01473forward
CNT30466905Zea maysSaccharum spontaneum66.9484.1289.07567forward
CNT30140763Zea maysLolium perenne8.0324.2988.2468forward
CNT30688823Zea maysTriticum urartu22.3118.482.01189forward
CNT30102982Zea maysOryza rufipogon9.562785.1981forward
CNT30118053Zea maysOryza nivara32.754.9679.78277forward

Expression of CNT307812

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRANEIPNVLSPGSCMTLIRVTLDPTLLLVVSLGWSSFAALKKSSAFTAIGSLQTNPFTFTG

>peptide 2 (33 aa)
MLNSDLIFSVVVVLPELSLKPINCPLLHLKGLS*

>peptide 3 (32 aa)
ELYTIVEMYYHMYHSNKMGNDRLLYTLHSLFD*

>peptide 4 (30 aa)
MIDCCIPYIRFLIKDTVVEPQQGHNCNYST*

Sequence

>CNT307812
TGAACTGTACACAATTGTAGAGATGTATTACCATATGTATCATTCCAATAAAATGGGAAATGATAGACTGTTGTATACCTTACATTCGCTTTTTGATTAA
GGACACTGTGGTGGAGCCACAACAGGGACACAATTGCAATTATAGTACATAAATACTGAACATTTATTTTATTATCAGTCGCAACCTAGAAAAAGGTTAA
CACATAGAGTAGTATGTAAAATACAAGTACATTTCTTTATTCTCATATGTTGAACTCAGACTTGATTTTTTCAGTAGTGGTTGTTCTCCCAGAACTGAGC
TTGAAGCCAATCAATTGTCCCCTTTTGCACTTGAAAGGCCTTAGCTAGGACATCATCCGAGATAGGTGGCTTTGATCCAAAGACTGCATTGGCAATAGTA
ATAGCTCCAGGGTTCTGGCTACTTAGAGCAGCGAGCGCGACTGCTGGCTTGTCATGTACTGGGTTGAACTGGAAGTGGATTAGTCCTTGGGGGAATACAA
ACACATCGCCCTTGTTGAGAACCTTGGCAAATAGCCTGTTGCTTCTATCAGCTTGGTTGGAGGTGACAAATCCGACGTAGAGTGTCCCCTCAAGCACAGT
GAGGATCTCAGTGGCACGTGGGTGTGTGTGTGGAGGATTCTGACCTAATGGTGCGTAGTCAATGCGAGCCAACGAGATCCCCAACGTGTTGAGTCCAGGC
AGCTGCATGACATTGATTAGAGTAACGTTGGATCCCACCTTGCTTTTGGTGGTGTCCCTTGGCTGGTCAAGTTTTGCAGCCTTGAAGAAGTCGTCAGCGT
TCACAGCCATAGGGTCCTTGCAAACAAATCCATTCACCTTCACTGGA