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Detailed information on CNT3077644


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235516Brassica junceaBrassica oleracea28.0961.9588.42311forward
CNT30263765Brassica junceaBrassica rapa96.2126.8799.811065forward

Expression of CNT3077644

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMMKDMRQSQTKLGHQYVITCIQSFGNDIICKLLLNIFQNFRR*

>peptide 2 (37 aa)
MITENRVYMLYDDERHEAKSNKTWAPVCNNMYPIIRQ*

>peptide 3 (35 aa)
MFFVFFEGVGFNRKPVLPIYNIDRIQSDVLGFGETW

>peptide 4 (46 aa)
MNQPSVFPWFQVAEDDRLIIRTFQCLYLHLSSHCYVFCFLRRCGFQ*

Sequence

>CNT3077644
TTTGCTTTAAAAAAAAAAAACAGAATGGGAAAGTAAAAAAAATTCTCGATCCAATTTTTCTTTGACGAATCGACGACACGATATTACAGAGATAAAGAAC
CGATGGGAGAATCAGTGGTTAGATCTTGATGGATAGGGCGTTGGTGAAGATCGAAATTGTTGCTTGGTGAATGTTTCTCATGAATCGGAATCACGGTTGA
ATAAGATTGATCAGTGATTTGCTTGGTCACTTAAGATCTCCGAGCAAAAACAACTTCCAACTTCTTAGATGGATGATAACAGAGAACAGAGTCTATATGT
TGTATGATGATGAAAGACATGAGGCAAAGTCAAACAAAACTTGGGCACCAGTATGTAATAACATGTATCCAATCATTCGGCAATGATATAATCTGTAAGT
TACTATTAAACATTTTTCAGAATTTTAGACGCTAGGAATGGAACTGACAATTGGTAGTTAGGATTGAAACCGGAGTTTGATTGATTGATTTGGTGTTATT
ATCTGTAGATAGGAGAATTATATTGCTTTCTGCAACGTAGAACTTTTCCTAAAGTTCATTTTTCGTGTTAGAAATAATATATCAAATAATTTTAACAACA
AAGATCATATGTTTGTTTCTGAGGCTTCACATCCTCACCAAAAACTCACATTTCAATCAAAGTAAGAATCCTTCCCTTACTTTCAATGTAAGTCCTTTTG
CATGTTGCATGAATTTTTTGCCCCTAAAACATGTTACATATAAATTTAAAATCAGTAGCTAATCCCATCCTTTGTAAATAAGACATAATCGAGTAATAAA
TACAGGGAAAAACGCTTACAGTCTCATCAGCCAAGACGAATTCCATGGTCTCCACGGATTGAATGTAGTGTTTCCAAGCGTGTAGAACCTTTACATGAAC
CAACCAAGTGTTTTTCCATGGTTTCAAGTCGCCGAAGACGACCGATTGATCATTAGGACCTTTCAATGTTTGTATTTGCATCTTAGTAGCCATTGTTATG
TTTTTTGTTTTCTTCGAAGGTGTGGGTTTCAATAGAAAACCGGTGCTGCCTATTTATAATATTGATCGGATTCAAAGCGATGTGTTAGGTTTTGGAGAAA
CTTGGGG