Detailed information on CNT3076377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30259947Brassica junceaBrassica rapa77.9598.199.231294forward

Expression of CNT3076377

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MCLLLTGLAQYGKSIRHNYLHILGVDSHRASSPVRAATCKAASSLRVAQHNLLHLVRTECKAA*

>peptide 2 (62 aa)
MFKGIGYYLQQDQRNKSKFRSFSQLLHSRMLKINIVGWWMDQNQLPSVLELFIRRSSTTTLL*

>peptide 3 (95 aa)
MGSRSGITTSTSWELTLTALHHLSGPRHAKLLPLFVWHSTIYYIWSERNARLHRNIYRPPDSIANSIRSYIKAKIAAIRPTSPSLASSLFRLWNR*

>peptide 4 (62 aa)
MQFNRMPFFKKKKKKKRNADDYQLFVENLAGVQLCNSFVKSISSIGVKATRRLLKIAQWFSI*

>peptide 5 (47 aa)
MQSCFLSSCGTAQSITSGQNGMQGCIGTSIDLRTRSPIPSVPTSRQK*

>peptide 6 (32 aa)
PDDAISDLSNHHLGSRSRYLLKRYKGLHSRIE*

Sequence

>CNT3076377
CCGGATGATGCAATCTCAGATTTATCGAACCACCATCTCGGCTCCCGAAGTAGATATTTATTGAAGAGATACAAAGGACTCCATTCACGGATCGAATAAC
CATCATACTTATCCCAAGCATCAAACTTAAGCTCCCACCATTCAACAGAAAAAGATTCCCAGGCTTACATGACCACCTTTTGCTCTCGGGTTGCATCTCA
AACTTCTGGACCTTAAAGGAAAACAACAATCACTCATGGTTAGTAAGAAGACTCTTACGCTTTGTGTTTCCTTGGTTATGTATTGAAATAGGGAATGGTC
AAACCTGTCGGTTCTGGAGCGATAACTGGAGTCCATTTGGGTGCCTCACTGATTTCTTGAATCTCCCTCACTCAACCCGGCTAGGAATCCCGCGAACTGC
TACTCTCGCCAGTCTGAATGTTCAAGGGAATTGGATACTACCTGCAGCAAGATCAGAGAAACAAGTCCAAGTTCAGATCTTTCTCTCAACTATTACACTC
ACGGATGCTGAAGATCAATATAGTTGGGTGGTGGATGGATCAAAATCAACTACCTTCAGTACTGGAGCTGTTTATAAGGCGATCAAGCACCACAACCCTA
TTGTAGAATGGAGAAAGACAATATGGTGCTCAAGAGGAACTCCTAAGCACAGCTTCTTAGCTTGGCTATTCACTCTGAACCGTTGCCCAACAAGAGATCG
ACTGCTGTCTTGGGGACTCAACACCCCTTCTACATGCCTTCTATGCAACAATTGTGATGAAAGCCGTAATCATCTCTTCTTTGAATGTGTTTACTCCTCA
CAGGTCTGGCACAATATGGGAAGTCGATCAGGCATAACTACCTCCACATCTTGGGAGTTGACTCTCACCGCGCTTCATCACCTGTCAGGGCCGCGACATG
CAAAGCTGCTTCCTCTCTTCGTGTGGCACAGCACAATCTATTACATCTGGTCAGAACGGAATGCAAGGCTGCATAGGAACATCTATCGACCTCCGGACTC
GATCGCCAATTCCATCCGTTCCTACATCAAGGCAAAAATAGCTGCAATCAGACCAACCTCCCCGTCTCTGGCTTCCTCTCTATTTCGCTTGTGGAATCGG
TGATGCGCTTGATGATTCCATAACTCCAGTTTCTCTCCTAGTTGGGCCTCTGTCTATGGGCATTTACTATTGTGGTTAATTTATGTGATCTATGACTATG
GGTATGGGTTCGTGTAATTGGGCAAGGCCCTCATATTGCCTGCTTAGGGTGTAAACTTTTGTATTTTTCCTTTATGCAATTTAATAGAATGCCCTTTTTC
AAAAAAAAAAAAAAAAAAAAACGCAATGCCGACGACTACCAACTCTTCGTTGAGAATTTGGCAGGAGTTCAGTTATGCAATAGTTTTGTCAAAAGTATCT
CTAGTATAGGAGTAAAAGCAACTCGGAGATTATTGAAAATTGCACAATGGTTTTCCATATAACTAATTTAGTTTTTTTTTCTATAGGTATCTAGTGAAAA
TTTTCAATAAAATAATATATGTTTTATCAGTTGCGAATAATGATATTAAATATAAATTACATATAGTTAGTATATTGTTATAAATTATAAACGACTAAGC
CGTCTAACTAATAATTTAGGTGTCCACTTTATCAATTTAGATGCTAGGCGTTGAGTCACC