Detailed information on CNT3074932


BLAST search results

BLAST vs Swiss-Prot:
sp|P10896|RCA_ARATH, E-value = 7e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697166Brassica junceaOryza sativa40.8222.1384.5129forward
CNT30374643Brassica junceaArabidopsis thaliana87.3457.0287.32276forward
CNT3097189Brassica junceaSolanum tuberosum22.789.6186.1172forward
CNT30309961Brassica junceaCamelina sativa90.1949.2287.72285forward
CNT3060875Brassica junceaArabidopsis lyrata57.5941.1891.21182forward
CNT30261873Brassica junceaBrassica rapa85.1396.4291.45269forward
CNT30478171Brassica junceaArabidopsis halleri91.7737.0488.62290forward
CNT30365435Brassica junceaSorghum bicolor37.0315.2582.91117forward
CNT30643000Brassica junceaCannabis sativa37.6647.682.35119forward
CNT30104149Brassica junceaOryza rufipogon37.0312.0182.05117forward
CNT30604795Brassica junceaOryza punctata37.037.482.05117forward
CNT30551777Brassica junceaOryza brachyantha47.4714.7681.33150forward

Expression of CNT3074932

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLPYSISFSRVISGCSNTGGPSLEFTSLLLIFSTPSPSTNFLTSSSYTLALNAPKK

>peptide 2 (54 aa)
DRTLGLTSGLTEESSTANSVSVCVSQRSLVKVLVSKLDSLDVLLLHHKHVTILH*

Sequence

>CNT3074932
CGATCGGACCTTAGGCTTGACCAGTGGTTTGACCGAAGAAAGTTCCACGGCCAATAGCGTCAGCGTTTGCGTCTCCCAACGCAGCCTCGTTAAGGTATTG
GTCAGCAAGCTGGACTCTCTTGACGTTCTCTTGCTCCATCACAAGCATGTTACCATACTCCATTAGCTTCTCAAGAGTCATCTCCGGCTGCTCGAACACT
GGAGGACCTTCCCTCGAGTTCACCAGCCTCTTGCTGATCTTCTCCACTCCAAGTCCCTCAACGAACTTCCTCACCTCATCATCGTACACTCTCGCCCTCA
ATGCACCAAAGAAATC