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Detailed information on CNT3073470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543403Brassica junceaBrassica napus32.7328.3294.09254forward
CNT30236598Brassica junceaBrassica oleracea29.1240.1489.82226forward

Expression of CNT3073470

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MDDLIQLHLRDLRQSKKDQSELICFGIHLGVLSLDMPCSNWKKVVHVPNTFIIFTSFRIITF*

>peptide 2 (41 aa)
MGMTCSLETIDVLICILEAICLVEDISLFRTKRPYLYKEVAM

>peptide 3 (36 aa)
MNHLSGVHWLQVVDGDDLFIRNNRCFDLHFRSHLFG*

>peptide 4 (82 aa)
MQSLHQTTYIKNWPNHSSYLLMSTDNINKKKKTIFFQASVCKLKKKRFALMAIVESYRVMDDHGRSNSASSPGSEAVKERSI*

Sequence

>CNT3073470
ATTTTTAAGCAAATGTTTGGTACATTTTAAAATAAATACTCATCAGCTATATAATTGTTTTTGGTACATTTAACGTAAACAAAATTAAAATGGGCCAGCA
TATTAATTGAAAAAGAAAAATTATGCAAAGCCTACATCAAACCACATACATAAAAAATTGGCCCAACCACAGTAGTTATCTTTTGATGTCAACCGACAAC
ATTAACAAAAAAAAGAAAACAATCTTCTTTCAGGCATCAGTTTGCAAACTCAAAAAAAAAAGATTTGCTTTAATGGCGATTGTAGAGAGTTATCGAGTCA
TGGACGATCATGGACGATCTAATTCAGCTTCATCTCCGGGATCTGAGGCAGTCAAAGAAAGATCAATCTGAACTCATTTGTTTTGGTATTCATCTTGGAG
TTTTGTCACTTGATATGCCATGCTCCAATTGGAAGAAGGTTGTACATGTTCCAAATACATTTATAATATTTACATCATTTAGAATAATAACTTTTTAATA
AAAACGTGAATGAAAAATTTAGGATTGCTTACATTCTCATCCACCAAGACGAATTACATGGTTTCTCCACCTAGTTGAATGTTTTGTTTCCAAGAATGTA
GAACCTTTGCATGAACCATCTTAGTGGTGTGCACTGGCTTCAAGTTGTTGATGGGGATGACTTGTTCATTAGAAACAATCGATGTTTTGATTTGCATTTT
AGAAGCCATTTGTTTGGTTGAGGATATCAGTTTGTTTAGGACGAAGCGTCCTTATTTATATAAAGAAGTGGCGATG