CANTATAdb - search

Detailed information on CNT3073146

BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30265159	Brassica juncea	Brassica rapa	100	54.87	100	620	forward

Expression of CNT3073146

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MLSQYTIVARVRGQCISRRRLRSQQVSATALATPLYSASALERETVGCRLADQDRRLSPKKTQKPEVERRVEGQPAQSASE*

>peptide 2 (42 aa)
MRDYAHEYRSTTLTRIGIFSLSNTLPQSERRAARRQGWIESL*

Sequence

>CNT3073146
TTTAATTTGAAAATTAGTTTCTTTATGCCAATGGATAAAATTTATCGACTTTGTTGAGTTACAAATAGTGTAGGATGCGTTTGTGTGAAAGTGGAAATAT
TTCCCTTGGATTCATATGAAGATTTACATCAGTTTATATACACAAAACTGTTCAGAGATATGCGAGATTATGCCCACGAATATAGGAGTACAACATTAAC
AAGAATAGGAATATTCTCTTTGTCTAACACCCTCCCTCAGTCTGAGCGTCGAGCTGCGAGACGCCAAGGCTGGATCGAAAGCTTGTGAATAACGAAGTAG
GTAGGCCCTTTGTGAAGATATCGGCATACTGAGAAGACGCCGGGTTTGACGAGAGATAGACTGCACTGATGTTGTCACAATACACGATAGTGGCGCGGGT
GAGAGGGCAGTGCATCTCGAGGAGGAGATTGCGTAGCCAACAAGTTTCTGCGACTGCATTAGCTACACCTTTGTACTCGGCTTCCGCACTGGAACGTGAG
ACCGTAGGTTGTCGCTTAGCTGACCAAGACAGAAGATTATCTCCCAAGAAGACACAGAAGCCAGAAGTGGAGCGACGTGTCGAAGGACAGCCAGCCCAAT
CCGCGTCGGAGTAGGCTGTC