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Detailed information on CNT30727557


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7X9A0|RCA1_LARTR, E-value = 4e-70

BLAST vs NONCODE:
NONBRAT001511, E-value = 7e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3096945Corchorus capsularisSolanum tuberosum27.141.3990.27113forward
CNT30185579Corchorus capsularisSecale cereale41.4945.2986.13173forward
CNT30564971Corchorus capsularisActinidia chinensis25.6637.1585.98107forward
CNT30663145Corchorus capsularisTriticum dicoccoides55.1648.9486.09230forward
CNT30310249Corchorus capsularisCamelina sativa27.5851.1191.3115forward
CNT30233037Corchorus capsularisAnanas comosus45.3262.5884.66189forward
CNT30213184Corchorus capsularisHelianthus annuus80.8218.2286.94337forward
CNT30355370Corchorus capsularisLactuca sativa77.789.584.88324forward
CNT30642662Corchorus capsularisCannabis sativa54.4444.2590.75227forward
CNT3034456Corchorus capsularisTheobroma cacao40.5378.689.94169forward
CNT30120246Corchorus capsularisCitrus clementina87.2993.3387.36364forward
CNT3038844Corchorus capsularisCucumis melo43.6525.3588.46182forward
CNT30604727Corchorus capsularisOryza punctata35.2555.0685.71147forward
CNT3039667Corchorus capsularisMarchantia polymorpha24.4645.1382.35102forward

Expression of CNT30727557

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PGKVSTSLTTSSSATWSALKIPLQTPILSSLVGDQ*

>peptide 2 (79 aa)
MIGTRGFSSLLYIPGSCTLVGLSAMFMRVALTIWLLTVYWVSTHFSLLDYVGCFTVSLPDQLGWLSGVSTFQFSGTHHNW

>peptide 3 (30 aa)
MSAASRYLCLINLAGSPAFPLSNSPALIIIG

Sequence

>CNT30727557
GCCGGGGAAAGTGTCGACTAGCTTGACAACATCATCATCAGCAACGTGGTCGGCCCTGAAAATACCTTTGCAGACACCAATTCTGTCTTCCCTGGTGGGT
GACCAGTAGAACTTCTCCATACGACCGTCACGGATAAGGGGAGCGTACAATGTGGAGAAATCGTTACCGGTGACAATGATTGGAACACGAGGGTTCTCTT
CCTTGTTGTACATACCGGGGAGTTGCACGTTGGTTGGGTTATCAGCAATGTTCATGAGGGTTGCGTTGACCATCTGGTTGTTGACTGTGTATTGGGTGAG
CACACATTTTTCCCTTCTTGATTATGTCGGCTGCTTCACGGTATCTTTGCCTGATCAACTTGGCTGGCTCTCCGGCGTTTCCACTTTCCAATTCTCCGGC
ACTCATCATAATTGGGC