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Detailed information on CNT30727555


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7X9A0|RCA1_LARTR, E-value = 9e-90

BLAST vs NONCODE:
NONBRAT001511, E-value = 7e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30439608Corchorus capsularisAegilops tauschii81.6228.584.5342forward

Expression of CNT30727555

Peptides detected in this lncRNA

>peptide 1 (35 aa)
PGKVSTSLTTSSSATWSALKIPLQTPILSSLVGDQ*

>peptide 2 (80 aa)
MIGTRGFSSLLYIPGSCTLVGLSAMFMRVALTIWLLTVYWVRAHIFPFLIMSAASRYLCLINLAGSPAFPLSNSPALIIIG

Sequence

>CNT30727555
GCCGGGGAAAGTGTCGACTAGCTTGACAACATCATCATCAGCAACGTGGTCGGCCCTGAAAATACCTTTGCAGACACCAATTCTGTCTTCCCTGGTGGGT
GACCAGTAGAACTTCTCCATACGACCGTCACGGATAAGGGGAGCGTACAATGTGGAGAAATCGTTACCGGTGACAATGATTGGAACACGAGGGTTCTCTT
CCTTGTTGTACATACCGGGGAGTTGCACGTTGGTTGGGTTATCAGCAATGTTCATGAGGGTTGCGTTGACCATCTGGTTGTTGACTGTGTATTGGGTGAG
AGCACACATTTTTCCCTTCTTGATTATGTCGGCTGCTTCACGGTATCTTTGCCTGATCAACTTGGCTGGCTCTCCGGCGTTTCCACTTTCCAATTCTCCG
GCACTCATCATAATTGGGC