« Back to Corchorus capsularis search


Detailed information on CNT30727553


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7X9A0|RCA1_LARTR, E-value = 6e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295268Corchorus capsularisTriticum aestivum47.4682.5684.82336forward
CNT30223071Corchorus capsularisHordeum vulgare30.5128.9584.72216forward

Expression of CNT30727553

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MCKVLTVESSSLDSILVSITKSSLTQIFVSQLDSLHVLLLCNKHVSVLQQLLNGHFRLLEATWSALKIPLQTPILSSLVGDQ*

>peptide 2 (30 aa)
MSAASRYLCLINLAGSPAFPLSNSPALIIIG

>peptide 3 (33 aa)
MIGTRGFSSLLYIPGSCTLVGLSAMFMRVALTI*

Sequence

>CNT30727553
ATGCAAATTAAAAATACTGACCCAAAGTGTAGATTTATAACACAAAAATAGGGGATACAAATCCACTTAAAAACAAAAGACGGAATACAAATATAGAATA
TATCTCACATGACTTGATAGAAAAAAATAAAGGGGGTCTTTTTGGAGCACCCAAATATTAAAAAAGGCCTTAGAATGTGTAAGGTTCTAACCGTAGAAAG
TTCCTCTCTTGATAGCATCCTCGTTAGCATCACCAAGAGCAGCCTCACTCAAATATTTGTCAGCCAATTGGACTCTCTTCACGTTCTCTTGCTCTGCAAC
AAGCATGTTTCCGTACTCCAACAGCTTCTCAATGGTCATTTTAGGTTGCTCGAAGCAACGTGGTCGGCCCTGAAAATACCTTTGCAGACACCAATTCTGT
CTTCCCTGGTGGGTGACCAGTAGAACTTCTCCATACGACCGTCACGGATAAGGGGAGCGTACAATGTGGAGAAATCGTTACCGGTGACAATGATTGGAAC
ACGAGGGTTCTCTTCCTTGTTGTACATACCGGGGAGTTGCACGTTGGTTGGGTTATCAGCAATGTTCATGAGGGTTGCGTTGACCATCTGAGCACACATT
TTTCCCTTCTTGATTATGTCGGCTGCTTCACGGTATCTTTGCCTGATCAACTTGGCTGGCTCTCCGGCGTTTCCACTTTCCAATTCTCCGGCACTCATCA
TAATTGGG