Detailed information on CNT30722486


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7S5|PSYR1_ARATH, E-value = 7e-44

BLAST vs NONCODE:
NONORUT002669, E-value = 5e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691405Triticum speltaOryza sativa62.1929.9282.72301forward
CNT30233824Triticum speltaBrassica oleracea24.3826.9483.05118forward
CNT30552618Triticum speltaOryza glaberrima73.5573.2584.55356forward
CNT30460927Triticum speltaSaccharum spontaneum66.1234.7479.69320forward
CNT3066951Triticum speltaLeersia perrieri27.073.2188.55131forward
CNT30686777Triticum speltaTriticum urartu58.2640.9380.14282forward
CNT30704500Triticum speltaPrunus avium23.352.8782.3113forward
CNT30150273Triticum speltaBrachypodium distachyon28.159.9185.29136forward
CNT30575248Triticum speltaOryza barthii20.8732.6983.17101forward
CNT30603683Triticum speltaOryza punctata51.4557.2485.94249forward

Expression of CNT30722486

SRR9114152: 1.33 RPKM

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GPPSPPLSPRDEPNQGTGERRPPPPLPGAAAQ*

>peptide 2 (90 aa)
ARLLPPSRREMNRTREPANGGHRHLSPEQPRSEESSGVYTFKEGDYFLYGWPHERIMVDTLASGFEHLQHLLFIPCAPKCRIQDLKLLPF*

>peptide 3 (94 aa)
MVGLMKGLWWTHLQAASSTFSICSSYPVPRSVGSRISSCFPSDFISCTQFTSSFDEDKTRTGRLPVSSSSRTMPKLYMSPLSVATHPCPYSGGM*

Sequence

>CNT30722486
GGGCCCGCCTTCTCCCCCCCTCTCGCCGCGAGATGAACCGAACCAGGGAACCGGCGAACGGCGGCCACCGCCACCTCTCCCCGGAGCAGCCGCGCAGTGA
GGAAAGTTCTGGTGTCTATACTTTCAAGGAAGGAGACTACTTCCTGTATGGTTGGCCTCATGAAAGGATTATGGTGGACACACTTGCAAGCGGCTTCGAG
CACCTTCAGCATCTGCTCTTCATACCCTGTGCCCCGAAGTGTAGGATCCAGGATCTCAAGTTGCTTCCCTTCTGATTTCATCTCCTGTACCCAGTTCACA
AGTTCTTTTGATGAAGACAAGACCAGGACAGGCCGCCTTCCAGTGAGCAGCTCAAGTAGGACCATGCCAAAACTGTACATGTCACCTCTCAGTGTAGCAA
CCCATCCTTGTCCATACTCAGGTGGGATGTAGCCCGGAGTGCCAACTAGCTCAGTTGTGAAATGGGTTTGACTGTCAATCAACC