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Detailed information on CNT3072234


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZ45|H2B9_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674589Quercus suberSetaria viridis17.6247.8482.88111forward
CNT30523142Quercus suberSetaria italica17.6221.3582.88111forward
CNT30315505Quercus suberCorylus avellana25.0834.5785.44158forward
CNT30518328Quercus suberJuglans regia29.3735.7185.41185forward
CNT30702570Quercus suberQuercus lobata19.3724.487.7122forward
CNT30618876Quercus suberSesamum indicum27.9410.8285.8176forward
CNT30381273Quercus suberManihot esculenta23.6541.7480.54149forward
CNT30526608Quercus suberPhaseolus vulgaris28.8922.583.52182forward
CNT30630598Quercus suberVigna unguiculata25.0828.3787.97158forward
CNT30200086Quercus suberPisum sativum16.9820.0887.85107forward
CNT3094085Quercus suberSolanum tuberosum28.4135.4579.89179forward
CNT30284042Quercus suberTriticum aestivum27.9485.4481.25176forward
CNT30395424Quercus suberTriticum turgidum27.9436.5980.11176forward
CNT30565715Quercus suberActinidia chinensis27.9422.4285.23176forward
CNT30586986Quercus suberMusa acuminata27.9449.7281.25176forward
CNT3086649Quercus suberVigna radiata24.1320.3886.18152forward
CNT30510004Quercus suberSolanum lycopersicum12.5425.987.3479forward
CNT30552027Quercus suberOryza glaberrima27.9432.6580.68176forward
CNT30171046Quercus suberTrifolium pratense28.4150.4284.36179forward
CNT30435607Quercus suberAegilops tauschii27.9422.3980.11176forward
CNT30244799Quercus suberAvena sativa29.3725.7781.62185forward
CNT30660053Quercus suberTriticum dicoccoides29.3727.981.08185forward
CNT30597299Quercus suberFraxinus excelsior31.2735.8882.23197forward
CNT30136307Quercus suberLolium perenne28.129.880.79177forward
CNT3015998Quercus suberZea mays16.9827.7283.18107forward
CNT30606042Quercus suberGossypium raimondii18.5738.3688.03117forward
CNT30205622Quercus suberHelianthus annuus12.729.6387.580forward
CNT30129800Quercus suberCorymbia citriodora27.9421.8685.23176forward
CNT30722188Quercus suberTriticum spelta27.9425.7780.68176forward
CNT30346527Quercus suberEragrostis tef17.9453.5583.19113forward
CNT30359864Quercus suberLactuca sativa18.5728.2682.91117forward
CNT30369169Quercus suberOryza glumipatula28.4131.2481.01179forward
CNT30429187Quercus suberPapaver somniferum28.4117.1883.24179forward
CNT30570929Quercus suberVitis vinifera30.3228.4685.86191forward
CNT3052765Quercus suberAmborella trichopoda18.5723.0384.62117forward
CNT3024772Quercus suberPopulus trichocarpa31.7533.7380.5200forward
CNT30327286Quercus suberAsparagus officinalis24.1316.8185.53152forward
CNT30577496Quercus suberOryza barthii17.6220.7981.98111forward
CNT30174435Quercus suberVigna angularis28.4126.7283.24179forward
CNT30114697Quercus suberEutrema salsugineum28.4129.284.92179forward

Expression of CNT3072234

Peptides detected in this lncRNA

>peptide 1 (79 aa)
TRQDQTHRSLNLPRRDRGLLVVPSQSRRLLGELLEDIVDEAVHDPHSLARNPNIGVNLFENLEEVDLLRTKLEKKETVE*

Sequence

>CNT3072234
CACCAGGCAAGACCAAACGCACCGCAGTCTGAATCTCCCGAGACGTGATCGTGGGCTTCTTGTTGTACCGAGCCAATCGCGACGACTCCTGGGCGAGCTT
CTCGAAGATATCGTTGATGAAGCTGTTCATGATCCCCATAGCCTTGCTCGAAATCCCAATATCGGGGTGAACCTGTTTGAGAACCTTGAAGAGGTAGATC
TTTTAAGAACCAAACTTGAGAAAAAAGAGACAGTGGAGTAAGTGGAATTGGAGAAAGAAACTATTTTGGCTTTTTTATTCTTTGGATCCCATGTTTTGAA
AGCTAGAGAGAGGATGTATGAAGGAGAATCTTGTAGCAGATAACACAATACAGAGAGAAATTTATGTTTATTTTTTATATTTATTTTTAAAAATGATTCT
ATAATTCCTTGCTCTATCTTTATATTAACATTATGTCAAAATGTTATGATATTATTATGGTGCAATGTAAATGATGACTAAAAGATCTTGTGAGCATTGG
TCTCTTTCCCAGTAACTTGTAATGAAGCATGTATATAGGTACTGTGGCTTTTTTACTTGAGCAGTCAGGATTGCGGCAACTGAATGATTTGTACAATGCC
TTTTGATATATATAGATTAAGTTAAACATG