Detailed information on CNT30721781


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393877Triticum speltaTriticum turgidum100.667.6198.5334forward
CNT30363122Triticum speltaSorghum bicolor20.7817.6592.7569reverse complement
CNT30359565Triticum speltaLactuca sativa20.7810.2492.7569forward

Expression of CNT30721781

SRR9114152: 21.29 RPKM

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LRRRSKQTPRVRYPVRLLRRHLRDEGQVEEEEDEEARGSAER*

>peptide 2 (56 aa)
TSAAAASRHREFDTQSACCAATSAMRAKWKKKRMRRQEEAPKDEAAIQVGEQRGES*

Sequence

>CNT30721781
ACCTCCGCCGCCGCAGCAAGCAGACACCGAGAGTTCGATACCCAGTCCGCCTGCTGCGCCGCCACCTCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGA
TGAGGAGGCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGTGAACAACGAGGAGAAAGCTGAACCTTGTATCATTGCACCAGTATGTTGGG
ATGATAGGGTGTTCTGGTTCCTGATATGTCTGGGTTGTTGTGATATTTGGGTGATGCCAACCCTTGTAACATGAGGATAATTATATGCTTTCCATCGTGG
CTGGATATTCAGCTTAAGAAATATTATCATCT