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Detailed information on CNT30721767


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Triticum speltaOryza sativa31.6925.4396.22238forward
CNT30522718Triticum speltaSetaria italica28.128.6395.73211forward
CNT30188029Triticum speltaSecale cereale63.6569.2896.23478forward
CNT30393906Triticum speltaTriticum turgidum93.2197.36100700forward
CNT30589400Triticum speltaMusa acuminata31.4234.594.07236forward
CNT30250314Triticum speltaAvena sativa52.8660.8990.93397forward
CNT30664919Triticum speltaTriticum dicoccoides94.9496.7498.46713forward
CNT30129910Triticum speltaCorymbia citriodora31.8237.9494.14239forward
CNT30685532Triticum speltaTriticum urartu66.4453.298.2499forward
CNT30345523Triticum speltaEragrostis tef31.9626.6495.42240forward
CNT30371011Triticum speltaOryza glumipatula27.5631.8597.58207forward
CNT30108138Triticum speltaOryza longistaminata27.325.3197.07205forward
CNT30579967Triticum speltaEchinochloa crusgalli31.5623.2696.62237forward
CNT30117588Triticum speltaOryza nivara31.6919.7296.22238forward

Expression of CNT30721767

SRR9114152: 263.23 RPKM

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGG

>peptide 2 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 4 (31 aa)
LFRQLQCLTLRGSERQVVNQKNRDALINLRK*

Sequence

>CNT30721767
TTATTCAGACAACTTCAGTGTTTGACATTGAGAGGTTCAGAGAGACAAGTAGTTAACCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAG
ATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGA
ACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGG
GGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTG
CACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGG
GGGTCGAAGCTGCCGCCGGGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGA
TGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTG
CGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGC