CANTATAdb - search

Detailed information on CNT30721280

BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 5e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30515426	Triticum spelta	Juglans regia	20	7.46	83.67	98	forward

Expression of CNT30721280

SRR9114152: 87.7 RPKM

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSMSLKRDLPARRIGSKAFRRSISGRMSSMGAPLTLMRPRPGLQ*

Sequence

>CNT30721280
TTCAGTTTCATCATTAACATAAGATTATGATAGCAAAACCCCTTCGTCAACTAGGCAGGATACTGCAGACAACTCACAGTTCTTAGAGATCATATCCAAT
TCATTGGTTCAAAAGAAAACAAACTACTAGCGGTAAAAGGTAGATAGATAGGCAGGCAAGGAGTAGATCTGGCTCGTCTTCCCTCCGCCGCGGACGCGGA
TACGCATGTCGATGTCCTTGAAGCGGGACCTGCCGGCGAGAAGGATCGGCTCGAAGGCCTTCAGGCGGAGCATCTCGGGGCGGATGAGCTCGATGGGGGC
GCCGTTGACCTTGATGAGGCCGCGCCCGGGTTTGCAGTAGGCCACGGCGACGGCGGTCTTCTTCCGGCCGAAGCACTGGACGGTGCCCGGCGTCGGGCGG
GTGAGAACGGCTGCCATGGTGGCTGCGGCGGTGTGCTTGGTTGCTGTGAGCGCGGCGGCGCAGGTTAGGGTTTTTGGTGGCGGCGCGTAG