CANTATAdb - search

Detailed information on CNT30720686

BLAST search results

BLAST vs Swiss-Prot:
sp|Q2LGZ2|ATPG_VIGUN, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30520196	Triticum spelta	Setaria italica	54.81	50.92	90.38	416	forward
CNT30289892	Triticum spelta	Triticum aestivum	28.33	86.69	100	215	forward
CNT30243750	Triticum spelta	Avena sativa	64.03	54.42	94.65	486	forward
CNT30453817	Triticum spelta	Saccharum spontaneum	54.81	39.36	88.7	416	forward
CNT30363035	Triticum spelta	Sorghum bicolor	54.81	59.01	90.14	416	forward

Expression of CNT30720686

SRR9114152: 40.55 RPKM

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MERFFRRSMALSVALLMALILAASSLASDSWRARRIWLLR*

Sequence

>CNT30720686
TTTGGGTGTCTTTTATAAGTGTTGATTTGTTGAATGACTACTAAGTGAGGACCATTTCACTAGGGTTTCTACCAAGAAACTGCATATGGGATTACTCTGG
ATTGCATAAACAAATTGCATATGGGTGGAGGCGGGACTGCATAGATAAATTACTCTGGATTATATATTTGGCATCTCCGAACTGAATCTTAGAACAGACA
TCCTTTTTTGTGCTATATGAGAAATTATTACAGACAGGCACAGACCAAGCAAGATAATAAGTAGAAGAGTGGAGAAAAAGAGGCAAAGAGTTATATATAA
CAGCGGCGGCTCAGCTCAGGTGGCGAGGAGGAATCAGCCGGACAGGGCGTCGGCGCCAGCGACGATCTCAAGGATCTCTCCGGTGATCTTGGCCTGGCGT
CGGCGGTTGTAGACCATGGAGAGATTTTTCCGGAGGTCGATGGCATTGTCTGTGGCGCTGCTCATGGCGCTCATCCTGGCGGCGAGCTCGCTAGCGAGCG
ACTCCTGGAGGGCACGCAGGATCTGGCTGTTGAGGTAGAGCGGGAGGAGAGCGTCGAGGATCTGGACGGGGTCCTGCTCGAACTGGACGACGGGGGAGAA
GGGCTGCATCTCGATCTTGATCTTCTCGCGCTCCACGGTGAGCTTGCCTTCCTTGGTGGTGAGCTTGAAGAGCTCGTCCTCGGTGGCGTCGACACAGATG
CCGTTGACATCGCAGATCTCGCCCTTAGGGGACATGGGCAGCAGCGTCTGGATGATGGG