CANTATAdb - search

Detailed information on CNT30720602

BLAST search results

BLAST vs Swiss-Prot:
sp|P0C1M0|ATPG_MAIZE, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30554409	Triticum spelta	Oryza glaberrima	35.7	16.1	89.82	226	forward
CNT3012827	Triticum spelta	Zea mays	39.65	15.55	91.24	251	forward
CNT30596670	Triticum spelta	Oryza meridionalis	38.07	39.77	90.87	241	forward
CNT30117211	Triticum spelta	Oryza nivara	38.07	20.42	90.46	241	forward

Expression of CNT30720602

SRR9114152: 48.2 RPKM

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MERFFRRSMALSVALLMALILAASSLASDSWRARRIWLLR*

Sequence

>CNT30720602
TGGGTGGAGGCGGGACTGCATAGATAAATTACTCTGGATTATACATTTGGCATCTCCGAACTGAATCTTAGAACAGACATCTTTTTTTGTGCTATGAGAA
ATTATTACAGACAGACACAGACCAAGCAAGATAAGTAGAAGAGAGGAGAAAAGGAGGCAAAGAGTTATATATAACAGCGGCGGCTCAGCTCAGGTGGCGA
GGAGGAATCAGCCGGACAGGGCGTCGGCGCCAGCGACGATCTCAAGGATCTCTCCGGTGATCTTAGCCTGGCGTCGGCGGTTGTAGACCATGGAGAGATT
TTTCCGGAGGTCGATGGCATTGTCTGTGGCGCTGCTCATGGCGCTCATCCTGGCGGCGAGCTCGCTAGCGAGCGACTCCTGGAGGGCACGCAGGATCTGG
CTGTTGAGGTAGAGCGGGAGGAGAGCGTCGAGGATCTGGACGGGGTCCTGCTCGAACTGGACGACGGGGGAGAAGGGCTGCATCTCGATCTTGATCTTCT
CGCGCTCCACGGTGAGCTTGCCTTCCTTGGTGGTGAGCTTGAAGAGCTCGTCCTCGGTGGCGTCGACACAGATGCCGTTGACATCGCAGATCTCGCCCTT
AGGGGACATGGGCAGCAGCGTCTGGATGATGGG