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Detailed information on CNT30720165


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Triticum speltaOryza sativa30.2831.4991.55142forward
CNT30677847Triticum speltaSetaria viridis30.4929.2490.21143forward
CNT30522472Triticum speltaSetaria italica30.4926.0592.31143forward
CNT30317753Triticum speltaCorylus avellana26.0117.5385.25122forward
CNT30549690Triticum speltaIpomoea triloba29.2132.6286.86137forward
CNT30617135Triticum speltaSesamum indicum25.5911.9689.17120forward
CNT3042757Triticum speltaPrunus dulcis20.916.1784.6998forward
CNT30178072Triticum speltaSecale cereale36.2531.3795.88170forward
CNT30286361Triticum speltaTriticum aestivum53.345.799.6250forward
CNT30224394Triticum speltaHordeum vulgare14.712092.7569forward
CNT30382783Triticum speltaTriticum turgidum30.4925.5892.31143forward
CNT30563984Triticum speltaActinidia chinensis24.0954.3391.15113forward
CNT30553196Triticum speltaOryza glaberrima30.4925.6395.8143forward
CNT30435717Triticum speltaAegilops tauschii43.7133.77100205forward
CNT30241715Triticum speltaAvena sativa30.4936.295.8143forward
CNT30656490Triticum speltaTriticum dicoccoides43.533.0193.63204forward
CNT3082467Triticum speltaBrassica juncea21.5414.0982.18101forward
CNT30471244Triticum speltaSaccharum spontaneum30.4914.9495.1143forward
CNT30143346Triticum speltaLolium perenne30.0624.1992.91141forward
CNT3015042Triticum speltaZea mays30.4924.1694.41143forward
CNT30679384Triticum speltaTriticum urartu32.6225.2595.42153forward
CNT30348363Triticum speltaEragrostis tef30.725.8593.06144forward
CNT30325970Triticum speltaAsparagus officinalis28.7819.5788.89135forward
CNT30331117Triticum speltaDioscorea rotundata21.5410.6784.16101forward
CNT30147979Triticum speltaBrachypodium distachyon30.4925.2790.91143forward
CNT30101647Triticum speltaOryza rufipogon32.6216.4292.16153forward
CNT30496126Triticum speltaDigitaria exilis30.0620.7490.07141forward
CNT30117573Triticum speltaOryza nivara30.4925.9195.8143forward

Expression of CNT30720165

SRR9114152: 248.29 RPKM

Peptides detected in this lncRNA

>peptide 1 (30 aa)
EERSICTEFKTRDAGFSSNSGCKHLHYIIP*

>peptide 2 (33 aa)
MGKQGGFHLRFLERNTTRNGRTNTSESAGGDED*

>peptide 3 (47 aa)
RGTQHLHRIQDKGCRFQFELWMQTSSLHNSMIQLNIQRKWGNKAVSI*

>peptide 4 (67 aa)
MRFTPPLLARRRMAGLVMPWMLSRSTFLWRFAPPLPSPLPPLPRPDMVADDPLGAAARVGLGGGVVMG

Sequence

>CNT30720165
AGAGGAACGCAGCATTTGCACAGAATTCAAGACAAGGGATGCAGGTTTCAGTTCGAACTCTGGATGCAAACATCTTCATTACATAATTCCATGATTCAGC
TAAACATACAGAGGAAATGGGGAAACAAGGCGGTTTCCATCTGAGATTTCTTGAGCGCAACACTACTAGGAACGGGCGGACTAACACATCGGAATCTGCA
GGTGGCGACGAAGACTGACGACCGTCTGGCGGGGGCCAGCGGCCTAGCCGCCGAAGCCGTAGAGGATGCGCTTCACGCCGCCCCTCCTCGCCAGGCGCCG
GATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGGCGCTTCGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGGCCG
GACATGGTCGCCGACGATCCTCTTGGAGCTGCTGCGCGAGTGGGATTGGGGGGAGGGGTGGTGATGGGT