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Detailed information on CNT30710642


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 3e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Glycine maxCorylus avellana17.3334.5481.48162forward
CNT30727603Glycine maxCorchorus capsularis17.6533.484.24165forward
CNT30504810Glycine maxNicotiana attenuata16.1523.282.78151forward
CNT30637312Glycine maxCapsicum annuum17.1137.2181.88160forward
CNT3098150Glycine maxSolanum tuberosum10.820.6182.18101forward
CNT30510868Glycine maxSolanum lycopersicum15.6170.1982.88146forward
CNT30143836Glycine maxMedicago truncatula13.5821.7885.83127forward
CNT30261302Glycine maxBrassica rapa15.6128.2481.51146forward
CNT30355562Glycine maxLactuca sativa17.1127.4481.88160forward
CNT30550386Glycine maxOryza brachyantha11.2338.1881.9105forward
CNT30336663Glycine maxCynara cardunculus16.2632.5582.24152forward
CNT30723923Glycine maxLupinus angustifolius15.5170.7386.21145forward

Expression of CNT30710642

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQTHVWGRCGKWSPEGPSELPLGLLKVGRH

>peptide 2 (55 aa)
SDQFNKHITYLSTNTPMTIHGQRLRSPFPFIVTTPLTCNHQTKPTTKTQVIYVKT*

>peptide 3 (67 aa)
MHQALFSSREEIVNHDDVITASDEFVNEVALDEARAVGDDDSLPPAANPDRNAARVSLVPLKRASPI*

>peptide 4 (78 aa)
MSSNRIGSTTSWRMSSNLGFPNRCIRLSFLPVKKLSITMMSSPRAMSLSMRWLSMKLEPSVTMIRCLLPPIQIGTRPV*

Sequence

>CNT30710642
TCTGATCAATTCAACAAACACATAACCTACCTCAGCACCAACACCCCAATGACAATCCATGGCCAACGTCTCCGCAGTCCTTTTCCCTTCATCGTAACAA
CTCCTCTCACCTGTAATCACCAAACCAAACCAACAACGAAAACACAAGTTATTTATGTTAAAACATAAAAGCATGGTCCATTCATTCACTCACTCACCAA
TTGGATTCACATTTCCCCAGTAAGTCTCTTTCTGAGGATGCTCCAACGAATCACCATAAACCTCACTAGTACTAGTAAGTAGAAATCTAGCCCCAATTCT
CTTCGCAAGGCCAAGCATGTTAAGCATGCCCATCACATTCGATATGATGGTCTTCACGGGCGAATGAGCTCGAATAGAATCGGCTCAACGACGTCGTGGC
GAATGAGCTCGAACCTAGGGTTCCCGAACAGATGCATCAGGCTCTCTTTTCTTCCCGTGAAGAAATTGTCAATCACGATGATGTCATCACCGCGAGCGAT
GAGTTTGTCAATGAGGTGGCTCTCGATGAAGCTCGAGCCGTCGGTGACGATGATTCGTTGCCTCCTGCCGCCAATCCAGATAGGAACGCGGCCCGTGTGA
GCCTTGTGCCGCTGAAGCGAGCAAGCCCGATTTGAGGGAGGAATGTGTGGACCGGCTCGGGTGGGCCCATGCAAGAGAGAGTGGGCTGGATGATGAAGAA
GGTGGAGTCGATGAGGATGAACAAGAGGCGTTGCTCGCGGAGGAGGTAGTTGATGGATCTGGGGGAGAGATCTAGTGTGCTTGATGGATTTGGGGGAGTA
GGGTGAGCTCTCACTGCTCCCCAACATCTCTTCCTCCCTTCGGTGATGCAGACTCATGTTTGGGGAAGGTGTGGGAAATGGAGTCCGGAAGGGCCTTCAG
AACTGCCTCTTGGGCTTTTGAAGGTGGGTCGTCAC