Detailed information on CNT30709122


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39817|CALX_SOYBN, E-value = 8e-29

BLAST vs NONCODE:
NONGMAT001818, E-value = 3e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Glycine maxSetaria viridis39.4935.5582.01139forward
CNT30517641Glycine maxJuglans regia37.7824.7285.71133forward
CNT30377662Glycine maxArabidopsis thaliana34.6613.586.07122forward
CNT30281153Glycine maxChenopodium quinoa31.5317.0888.29111forward
CNT30728459Glycine maxCorchorus capsularis35.5120.1687.2125forward
CNT30629341Glycine maxVigna unguiculata64.220.792.04226forward
CNT30164689Glycine maxPistacia vera36.0823.0988.98127forward
CNT30190468Glycine maxSecale cereale29.8310.8684.76105forward
CNT30395817Glycine maxTriticum turgidum29.8313.5884.76105forward
CNT30561419Glycine maxActinidia chinensis39.221.8784.06138forward
CNT30238817Glycine maxBrassica oleracea34.6622.8983.61122forward
CNT30144554Glycine maxMedicago truncatula84.6634.8187.92298forward
CNT30264134Glycine maxBrassica rapa34.6614.0783.61122forward
CNT30605054Glycine maxGossypium raimondii37.7823.4688.72133forward
CNT30686469Glycine maxTriticum urartu29.8318.5884.76105forward
CNT30349705Glycine maxEragrostis tef47.7323.9780.95168forward
CNT30366134Glycine maxSorghum bicolor59.6633.2881.43210forward
CNT30120413Glycine maxCitrus clementina33.8114.7191.6119forward
CNT3038556Glycine maxCucumis melo54.8324.4383.42193forward
CNT30149228Glycine maxBrachypodium distachyon34.6625.6882.79122forward
CNT30101562Glycine maxOryza rufipogon37.2215.1685.5131forward
CNT30585446Glycine maxEchinochloa crusgalli32.9538.4184.48116forward
CNT30116414Glycine maxOryza nivara28.9836.4385.29102forward
CNT30725707Glycine maxLupinus angustifolius86.0854.9990.76303forward

Expression of CNT30709122

Peptides detected in this lncRNA

>peptide 1 (67 aa)
FSFVSWIPLHWPLPLTTTGGCFTFWVLNLWGFPFTILLIVPIFWFLSFFINNFQGCILIPVIWLYCT*

>peptide 2 (93 aa)
IFLCKLDSSSLASSTHHNRGLLHILGSQSLGLPIHHPPHRPNLLVSQLLHQQFPRVHSHPSHLALLHLSLEFSLSHPSPQVFYHQDLGLSWEG*

Sequence

>CNT30709122
ATTTTCCTTTGTAAGCTGGATTCCTCTTCATTGGCCTCTTCCACTCACCACAACCGGGGGCTGCTTCACATTTTGGGTTCTCAATCTTTGGGGCTTCCCA
TTCACCATCCTCCTCATCGTCCCAATCTTCTGGTTTCTCAGCTTCTTCATCAACAATTTCCAAGGGTGCATTCTCATCCCAGTCATCTGGCTTTACTGCA
CTTGAGTCTGGAATTTTCTCTCTCTCATCCCAGTCCTCAGGTTTTTTATCATCAGGATCTGGGATTGTCTTGGGAGGGATAAGAGGGGGTTCAAAATCAT
CAGCAGATAAGAAATTTACCTTCTTCTTCTGTTCCCCATCAATCAAAATTTG