CANTATAdb - search

Detailed information on CNT30708891

BLAST search results

BLAST vs Swiss-Prot:
sp|P00292|PLAS_CUCPE, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30587554	Glycine max	Musa acuminata	17.66	20.12	89.8	98	forward
CNT30148503	Glycine max	Brachypodium distachyon	11.53	20.45	89.06	64	forward

Expression of CNT30708891

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MEIFPASTPLGISSSSNTTLWGKPALFLNTIFSPEATEKLLGTKARDPSSPPSNTSMASRQWPQQRLQRLSAKP*

>peptide 2 (45 aa)
MPNLVAWGAETLTAALTLPALALRPVNEGIATAAEVTVAMSMDEE*

Sequence

>CNT30708891
GCCATAACAAGAAAGATCAACCAAGCTCTTCTAGAAAAAACAAAAATATTAGAAGAAGGAACCATATGAGAACTTAGACGTAGGAGACGAGCCCTTGAGA
CAATAATTAATTAACAGTGACTTTTCCCACCATACCAGCTCCTTGTAACGCTGTAAGTCTCACCAGGCGCATTGAGAAGGTCTTCATCGCTCATGGAGAT
TTTCCCTGCATCCACGCCGCTAGGAATCTCGTCCTCGTCGAACACAACGTTGTGGGGGAAACCTGCGTTGTTCTTGAACACGATCTTCTCCCCAGAGGCC
ACGGAGAAATTGTTGGGAACGAAAGCCAGAGACCCGTCATCACCACCCAGCAACACTTCAATGGCCTCGCGGCAGTGGCCACAACAGCGACTCCAACGTC
TTTCAGCGAAGCCTTGATGCCCAACCTTGTGGCTTGGGGAGCTGAGACTTTAACTGCGGCACTCACTTTGCCTGCGCTTGCCTTGAGGCCAGTGAATGAG
GGAATAGCAACGGCTGCAGAAGTGACGGTGGCCATGTCTATGGATGAAGAATGAG