CANTATAdb - search

Detailed information on CNT3070873

BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 7e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30376792	Quercus suber	Arabidopsis thaliana	16.62	35.52	84.03	119	forward
CNT30588616	Quercus suber	Musa acuminata	13.69	40.16	85.71	98	forward
CNT30311982	Quercus suber	Camelina sativa	10.61	20.77	89.47	76	forward
CNT3051634	Quercus suber	Amborella trichopoda	21.65	13.89	80	155	forward
CNT30116007	Quercus suber	Oryza nivara	19.69	20.8	82.98	141	forward

Expression of CNT3070873

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MPHFLYIQKFWCDEYPLKFMPPTVRWFGLQRQWRPWSRLHRYCGPCRFYRNHSLPSSHPMSS*

>peptide 2 (41 aa)
MASPSFGLEHNQMSHSQPVTHHDQASLSICMGMKLHPHMSA*

>peptide 3 (33 aa)
MASPSFGLEHNQMSHSQPVTHHDQASLSISLTP*

Sequence

>CNT3070873
TTGTAAAAATACGTATGATATTATTTAAAAATTAAAACCAAACATGCCCTTATCATATTAAATAATAATATGAAAAAGACAAAGAACTTAGCAGTTAGCA
GAAACATAGTACAGGATAGGAGACTCGGGGATTTAAAAAAGCAGAACATGCACTAAAAAACGTAAATACAGAGATTAATCCCAGTGAGATATTTCAATCT
TCAATGTTCTGGGATAATTTGCGAGCTATAATGTCTGTGACATCAAGTTGCAATATAAATTAAATGCCACATTTCTTATATATACAGAAATTTTGGTGTG
ATGAATATCCACTAAAATTCATGCCCCCTACTGTGCGGTGGTTTGGACTGCAGCGACAGTGGAGACCATGGAGTCGACTCCACAGATATTGCGGCCCCTG
CAGATTTTATAGAAACCACTCTCTCCCCAGCTCTCACCCCATGAGTTCTTGATGATCCAGTATGGCTTCTCCTTCATTCGGACTGGAGCATAACCAGATG
AGCCATAGCCAACCAGTAACACACCATGATCAAGCCTCTTTGAGCATATCTCTCACCCCATGAGTTCTTGATGATCCAGTATGGCTTCTCCTTCATTCGG
ACTGGAGCATAACCAGATGAGCCATAGCCAACCAGTAACACACCATGATCAAGCCTCTTTGAGCATATGTATGGGCATGAAACTCCACCCACATATGTCT
GCATGAACACCGCGTT