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Detailed information on CNT3070872


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3046025Quercus suberPrunus dulcis30.9127.2585.22230forward
CNT30599767Quercus suberFraxinus excelsior28.4951.3380.19212forward
CNT30714701Quercus suberMalus domestica golden30.9115.7286.09230forward
CNT30704623Quercus suberPrunus avium30.919.884.78230forward

Expression of CNT3070872

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MASPSFGLEHNQMSHSQPVTHHDQASLSICMGMKLHPHISHPMSS*

>peptide 2 (41 aa)
MASPSFGLEHNQMSHSQPVTHHDQASLSICMGMKLHPHMSA*

>peptide 3 (62 aa)
MPHFLYIQKFWCDEYPLKFMPPTVRWFGLQRQWRPWSRLHRYCGPCRFYRNHSLPSSHPMSS*

>peptide 4 (30 aa)
MYGHETPPTYLSPHEFLMIQYGFSFIRTGA*

Sequence

>CNT3070872
TTGTAAAAATACGTATGATATTATTTAAAAATTAAAACCAAACATGCCCTTATCATATTAAATAATAATATGAAAAAGACAAAGAACTTAGCAGTTAGCA
GAAACATAGTACAGGATAGGAGACTCGGGGATTTAAAAAAGCAGAACATGCACTAAAAAACGTAAATACAGAGATTAATCCCAGTGAGATATTTCAATCT
TCAATGTTCTGGGATAATTTGCGAGCTATAATGTCTGTGACATCAAGTTGCAATATAAATTAAATGCCACATTTCTTATATATACAGAAATTTTGGTGTG
ATGAATATCCACTAAAATTCATGCCCCCTACTGTGCGGTGGTTTGGACTGCAGCGACAGTGGAGACCATGGAGTCGACTCCACAGATATTGCGGCCCCTG
CAGATTTTATAGAAACCACTCTCTCCCCAGCTCTCACCCCATGAGTTCTTGATGATCCAGTATGGCTTCTCCTTCATTCGGACTGGAGCATAACCAGATG
AGCCATAGCCAACCAGTAACACACCATGATCAAGCCTCTTTGAGCATATGTATGGGCATGAAACTCCACCCACATATCTCTCACCCCATGAGTTCTTGAT
GATCCAGTATGGCTTCTCCTTCATTCGGACTGGAGCATAACCAGATGAGCCATAGCCAACCAGTAACACACCATGATCAAGCCTCTTTGAGCATATGTAT
GGGCATGAAACTCCACCCACATATGTCTGCATGAACACCGCGTT