Detailed information on CNT3070602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730253Quercus suberCorchorus capsularis65.445.2782.04206forward
CNT30629601Quercus suberVigna unguiculata62.5443.6882.23197forward
CNT30711842Quercus suberGlycine max17.1422.9890.7454forward
CNT3044720Quercus suberPrunus dulcis37.4617.9186.44118forward
CNT30159576Quercus suberPistacia vera63.1725.1380.4199forward
CNT30636643Quercus suberCapsicum annuum24.4416.3187.0177forward
CNT3094036Quercus suberSolanum tuberosum24.768.1689.7478forward
CNT30569510Quercus suberActinidia chinensis14.9222.691.4947forward
CNT30592144Quercus suberMusa acuminata14.9220.4391.4947forward
CNT30218729Quercus suberKalanchoe fedtschenkoi23.4925.5286.4974forward
CNT30423559Quercus suberPapaver somniferum21.5914.4486.7668forward
CNT30572629Quercus suberVitis vinifera21.5925.5686.7668forward
CNT30116611Quercus suberOryza nivara14.2922.2891.1145forward
CNT30176173Quercus suberVigna angularis22.5423.2892.9671forward
CNT30724415Quercus suberLupinus angustifolius31.7517.3982100forward

Expression of CNT3070602

Peptides detected in this lncRNA

>peptide 1 (79 aa)
GGAVNKDEDHATEGPSNTKNTNPATLVCVLEGVSLALVPNHSQNCDVKEKKCGNELCNKSSVKGPLVWLLYPITVKTVM*

>peptide 2 (37 aa)
MPPKAQAIPRIPTPPHWSAFLRGSVWLLYPITVKTVM*

>peptide 3 (30 aa)
RRCSKQGRRSCHRRPKQYQEYQPRHIGLRS*

Sequence

>CNT3070602
CCGGCGGTGCAGTAAACAAGGACGAAGATCATGCCACCGAAGGCCCAAGCAATACCAAGAATACCAACCCCGCCACATTGGTCTGCGTTCTTGAGGGGGT
CAGTCTGGCTCTTGTACCCAATCACAGTCAAAACTGTGATGTAAAGGAAAAGAAGTGTGGCAATGAACTCTGCAATAAGAGCTCTGTAAAAGGACCACTG
GTCTGGCTCTTGTACCCAATCACAGTCAAAACTGTGATGTAAAGGAAAAGAAGTGTGGCAATGAACTCTGCAATAAGAGCTCTGTAAAAGGACCACTGGG
TTAGCTCCTCAGGGT