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Detailed information on CNT30705067


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSM4|CHM1B_ARATH, E-value = 4e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Prunus aviumSetaria viridis12.8255.0784.8125forward
CNT30513024Prunus aviumJuglans regia22.2629.1386.64217forward
CNT30371693Prunus aviumArabidopsis thaliana12.7222.8483.06124forward
CNT30306600Prunus aviumTriticum aestivum13.2340.6988.37129forward
CNT3085000Prunus aviumVigna radiata34.0511.8283.43332forward
CNT30554195Prunus aviumOryza glaberrima22.157.0982.87216forward
CNT30254428Prunus aviumAvena sativa23.5942.8383.04230forward
CNT30669382Prunus aviumTriticum dicoccoides22.3636.5884.4218forward
CNT3060118Prunus aviumArabidopsis lyrata2479.5980.77234forward
CNT30141866Prunus aviumLolium perenne22.1535.5383.33216forward
CNT30347540Prunus aviumEragrostis tef25.8521.383.33252forward
CNT30368840Prunus aviumSorghum bicolor21.1357.3883.01206forward
CNT30370517Prunus aviumOryza glumipatula20.9240.8882.84204forward
CNT30571602Prunus aviumVitis vinifera21.7419.2282.55212forward
CNT30644153Prunus aviumCannabis sativa29.1340.5782.04284forward
CNT30116955Prunus aviumOryza nivara22.1527.3882.87216forward
CNT30111719Prunus aviumFicus carica34.3637.0686.57335forward

Expression of CNT30705067

Peptides detected in this lncRNA

>peptide 1 (30 aa)
KEKIQTHTHTHTQTNSHIYCTYIKEKMQTV*

>peptide 2 (33 aa)
RKDTNTHTHTHTDKFTYLLHVHKRKDANSLTRM*

Sequence

>CNT30705067
AAAGAAAAGATACAAACACACACACACACACACACACAGACAAATTCACATATCTATTGCACGTACATAAAAGAAAAGATGCAAACAGTCTGACTAGAAT
GTAACAAAACTCACATAACAACATATCGCAGCGAATTCAAATTCGTCAAATATACACAAATATCAATTTTCAAATTGCTTCAACAAGAGTCATAACTCTT
AATTAGCAATCGGTACAAACACATAAGCATATCATATATATATATTGAATTCAAAACCCAAGCTGATCGCCTTCCCTATTTTAACCTCTAGCCTTGAGCT
CCGCAAGCCTCCTGGAGAGGTCGTCCTCGTCGACCTTCTCGGTTTCCTTGGCCGGCACAGCATGGGCAGCTGGCTGAGGTAGGCCCACCGAAACCTCAAG
CCCATAGTCATCGGCGACCTGTTGCATCAAGCTATTGACCTCACCCTCGGGAGTCGAAAGCGAGGTTTCCGGTGGCCAGCGACGATTCGAGTGATTTGAC
AATATTTCCCATGGACTTATTGATGGTGAACATCTTGGCCTGGGTGTCGAGCCGAGCCACCACAGCGTCGAGCCGGGAAGCGAGCCGGAGATAGTTCATT
TGCTCTGTGCGCTTTCGGATCGCGTTCTCGGCGTAGATCCGAGCGCCGTCGACGTTGCCTTTTTCCATGGCCTTCTTGATCTTCAGCTTCTCGGCTTTCT
CCTCCTTCTCGCACTTTCTGGATTGGCGCTGAAGCGACTTGGACGTGAATTTCAGCTCCATGATCTGGTTCATCAGCTTCTCGGTGTTTCCCATGGTGGA
TTTTGGGGATTTGATTTTCTAGGGTTTTGGTTTTAAATCGGAGAAGGGTTCCGTATTTGTGTGTTTTGGACTAGCGATTTACGCGTTCCGCGTCTGTCTC
AGAGGGAAGTCAACAAGGCGAAGGTTCCTACTTTTCCTTTGTTGGGCCGCTTTTTTGTGAAGTATCGGATTGTTT