CANTATAdb - search

Detailed information on CNT30705066

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30143899	Prunus avium	Medicago truncatula	11.13	27.72	89.29	56	forward

Expression of CNT30705066

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MYAEKQQWKPRNPPHMSYDLCRSCNSPPLPNSVPMSS

>peptide 2 (29 aa)
LGPKSKENAYEGTRPGKKALDRNSAYESG*

Sequence

>CNT30705066
CTTGGGCCCAAAGTCTAAAGAGAATGCATATGAAGGAACTAGGCCTGGTAAAAAGGCTTTAGACAGAAACTCAGCGTACGAATCTGGGTAACAGAGGCCC
ACAACAGTAACAACAGAGAACAGGCCATCTCTTCAACCAGGTTAACCCAGGGGGGTTGGTCTAACCCAATTTAGTAAAGTTTAAAGGATACAATTAATTA
TAAATAAATTCATGACATAAATTTATAAATTACAACCACCAAAGCGTAGCATTTAAATAAACACATAAATTATTATACAACGTCAACATCAGGCAACACG
ACATGAACTTATTAACCCCATGATCTACATTATCTAGGAGATCAGATCAGACTATATTTACAAAGCCCCCATATATTATCTAGGGATTGGATGTATGCAG
AGAAGCAACAGTGGAAACCAAGGAATCCACCCCACATGAGTTATGACCTCTGCAGATCTTGTAATAGCCCTCCTCTCCCCAACTCTGTCCCCATGAGTTC
TTC