« Back to Quercus lobata search


Detailed information on CNT30703861


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XT99|AKR2_ORYSJ, E-value = 3e-45

BLAST vs NONCODE:
NONPOPT001153, E-value = 1e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316626Quercus lobataCorylus avellana95.3147.7590.57244forward
CNT3096605Quercus lobataSolanum tuberosum51.9515.8987.22133forward
CNT30192307Quercus lobataSecale cereale30.089.3987.0177forward
CNT30566880Quercus lobataActinidia chinensis88.6724.4984.58227forward
CNT30586652Quercus lobataMusa acuminata65.6218.8183.33168forward
CNT30133477Quercus lobataLolium perenne30.0838.1287.0177forward
CNT30370023Quercus lobataOryza glumipatula30.0831.5684.4277forward
CNT30328920Quercus lobataAsparagus officinalis55.8623.6482.52143forward
CNT30120862Quercus lobataCitrus clementina80.4737.8785.92206forward
CNT30603989Quercus lobataOryza punctata41.849.0883.18107forward

Expression of CNT30703861

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TSSTANDSSSTISSGVSFTDRAPMFWLKFSILVVPGMGHTSFPW*

Sequence

>CNT30703861
GACATCCTCAACAGCAAATGATTCAAGTTCAACCATTTCTTCTGGTGTCAGTTTCACAGACAGAGCTCCAATGTTTTGGTTAAAGTTTTCAATCTTGGTG
GTTCCAGGTATGGGACACACGTCCTTTCCTTGGTGATGAACCCAAGCCAATGCTAGTTGTGATGGGGTGCATCCCTTCCTTGCTGCCATTTCATTAACAC
GCTCAAATATGGTTTTGTTATGCTCCAGATTTTCAGGTTGGAACCTGGGTAGGAAC