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Detailed information on CNT30703567


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 3e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Quercus lobataOryza sativa38.4243.0280.41194forward
CNT30673219Quercus lobataSetaria viridis21.7824.8390110forward
CNT30523218Quercus lobataSetaria italica46.7343.2281.78236forward
CNT30317753Quercus lobataCorylus avellana59.4143.182.67300forward
CNT30546681Quercus lobataIpomoea triloba57.4361.783.45290forward
CNT30616210Quercus lobataSesamum indicum56.0422.6283.75283forward
CNT3069058Quercus lobataQuercus suber89.3151.5494.24451forward
CNT30196946Quercus lobataPisum sativum58.4241.285.08295forward
CNT30712284Quercus lobataGlycine max31.2933.6285.44158forward
CNT3042757Quercus lobataPrunus dulcis55.0545.8784.53278forward
CNT30178595Quercus lobataSecale cereale36.0430.5486.81182forward
CNT30305698Quercus lobataTriticum aestivum47.3343.8584.94239forward
CNT30221015Quercus lobataHordeum vulgare36.6335.186.49185forward
CNT30386576Quercus lobataTriticum turgidum46.7340.2783.9236forward
CNT30565712Quercus lobataActinidia chinensis18.2230.7792.3992forward
CNT3086297Quercus lobataVigna radiata58.4225.3784.41295forward
CNT30553196Quercus lobataOryza glaberrima38.4234.7781.44194forward
CNT30172567Quercus lobataTrifolium pratense55.6441.282.21281forward
CNT30441099Quercus lobataAegilops tauschii47.3346.3283.68239forward
CNT30255921Quercus lobataAvena sativa47.3342.5384.1239forward
CNT30656490Quercus lobataTriticum dicoccoides47.3338.6783.26239forward
CNT3059678Quercus lobataArabidopsis lyrata29.731.1984150forward
CNT3082467Quercus lobataBrassica juncea59.641.9882.72301forward
CNT30261175Quercus lobataBrassica rapa55.4559.3280.71280forward
CNT30450127Quercus lobataSaccharum spontaneum47.3335.7882.85239forward
CNT30135649Quercus lobataLolium perenne41.3940.7484.21209forward
CNT3015042Quercus lobataZea mays34.8529.7381.82176forward
CNT30229571Quercus lobataAnanas comosus28.1234.4782.39142forward
CNT30211420Quercus lobataHelianthus annuus59.4160.4881300forward
CNT30687044Quercus lobataTriticum urartu37.6218.6584.74190forward
CNT30348363Quercus lobataEragrostis tef47.3342.9182.01239forward
CNT30620798Quercus lobataCajanus cajan33.2732.1888.1168forward
CNT30357929Quercus lobataLactuca sativa61.9869.8783.71313forward
CNT30370989Quercus lobataOryza glumipatula21.1917.1288.79107forward
CNT30645456Quercus lobataCannabis sativa54.8536.1186.64277forward
CNT30147953Quercus lobataBrachypodium distachyon47.3327.582.43239forward
CNT30101647Quercus lobataOryza rufipogon36.0419.5384.07182forward
CNT30496126Quercus lobataDigitaria exilis47.9235.5981.82242forward
CNT30117618Quercus lobataOryza nivara38.4243.1181.44194forward
CNT3050826Quercus lobataCucumis sativus24.1635.7884.43122forward

Expression of CNT30703567

Peptides detected in this lncRNA

>peptide 1 (36 aa)
KFKIHISLFMINLNQHQLSPITTKTPNLKHNPNTKP*

>peptide 2 (54 aa)
MRPLIRLTPPRLAKRRMAGLVIPWMLSLRTLRCRFAPPFPKPLPPFPLPDIFSL*

Sequence

>CNT30703567
CAAAGTTTAAAATTCATATCAGTCTATTCATGATTAACTTAAATCAACATCAATTAAGTCCAATTACAACAAAAACCCCCAATTTGAAACATAACCCAAA
TACTAAACCCTAACCCTAACTCTTAACTCTAATCTCCTTCTTAACCTCCAAACCCATAGAGAGTCCTGCCCTGCCTCTTCAAAGCATAAACAACATCCAT
GGCAGTAACGGTCTTGCGGCGAGCGTGCTCGGTGTAGGTCACGGCATCGCGAATCACGTTCTCCAAGAAGATCTTGAGGACGCCACGGGTCTCCTCGTAG
ATGAGGCCGCTGATACGCTTGACTCCGCCACGCCTGGCCAAACGCCGAATGGCAGGCTTGGTAATTCCCTGGATGTTATCCCTCAGAACCTTACGGTGCC
GTTTCGCTCCTCCCTTTCCCAAACCCTTGCCTCCTTTTCCTCTTCCTGACATTTTCTCTCTCTGATTCTTTGTTTTTGAAAGGCTGCTTTGTTGTTTTTG
TTTTT