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Detailed information on CNT30702570


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000269, E-value = 9e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Quercus lobataOryza sativa26.420.8588.64132forward
CNT30675823Quercus lobataSetaria viridis2629.9589.23130forward
CNT30523103Quercus lobataSetaria italica26.219.3888.55131forward
CNT30315505Quercus lobataCorylus avellana43.847.9290.87219forward
CNT30518203Quercus lobataJuglans regia43.624.4791.74218forward
CNT30618877Quercus lobataSesamum indicum44.228.0889.59221forward
CNT3072234Quercus lobataQuercus suber24.419.3787.7122forward
CNT30379530Quercus lobataManihot esculenta52.646.2282.89263forward
CNT30526608Quercus lobataPhaseolus vulgaris54.433.6284.56272forward
CNT30632073Quercus lobataVigna unguiculata56.837.7785.92284forward
CNT30200086Quercus lobataPisum sativum5551.5987.64275forward
CNT30163367Quercus lobataPistacia vera5734.2182.46285forward
CNT3094085Quercus lobataSolanum tuberosum31.631.2982.28158forward
CNT30180643Quercus lobataSecale cereale26.215.8490.08131forward
CNT30296237Quercus lobataTriticum aestivum26.227.1890.08131forward
CNT30220711Quercus lobataHordeum vulgare26.212.6490.08131forward
CNT30383318Quercus lobataTriticum turgidum26.614.4788.72133forward
CNT30565715Quercus lobataActinidia chinensis32.420.6493.83162forward
CNT30586986Quercus lobataMusa acuminata23.633.3388.14118forward
CNT3086649Quercus lobataVigna radiata26.217.5689.31131forward
CNT30510004Quercus lobataSolanum lycopersicum24.239.6781.82121forward
CNT30553165Quercus lobataOryza glaberrima50.65583253forward
CNT30172842Quercus lobataTrifolium pratense59.653.7984.56298forward
CNT30443203Quercus lobataAegilops tauschii30.423.1788.16152forward
CNT30245301Quercus lobataAvena sativa26.613.6389.47133forward
CNT30656927Quercus lobataTriticum dicoccoides26.623.1389.47133forward
CNT30597299Quercus lobataFraxinus excelsior47.242.9984.75236forward
CNT30447591Quercus lobataSaccharum spontaneum26.224.0488.55131forward
CNT30130711Quercus lobataLolium perenne25.818.9787.6129forward
CNT303693Quercus lobataZea mays2637.6890130forward
CNT30606042Quercus lobataGossypium raimondii33.454.7589.22167forward
CNT30231835Quercus lobataAnanas comosus43.833.6984.47219forward
CNT3066775Quercus lobataLeersia perrieri17.823.1883.1589forward
CNT30205622Quercus lobataHelianthus annuus49.691.8584.68248forward
CNT30129800Quercus lobataCorymbia citriodora53.233.0488.72266forward
CNT30684130Quercus lobataTriticum urartu26.218.0790.08131forward
CNT30721953Quercus lobataTriticum spelta26.618.9789.47133forward
CNT30346527Quercus lobataEragrostis tef2252.1389.09110forward
CNT30363575Quercus lobataSorghum bicolor24.413.2388.52122forward
CNT30619778Quercus lobataCajanus cajan7052.8785.14350forward
CNT30596761Quercus lobataOryza meridionalis26.616.8487.97133forward
CNT30360275Quercus lobataLactuca sativa57.864.6584.08289forward
CNT30369945Quercus lobataOryza glumipatula50.636.3583253forward
CNT30154529Quercus lobataPrunus persica37.880.0885.71189forward
CNT30429187Quercus lobataPapaver somniferum2210.5684.55110forward
CNT30570929Quercus lobataVitis vinifera57.442.7786.06287forward
CNT3052765Quercus lobataAmborella trichopoda49.849.0283.53249forward
CNT3024639Quercus lobataPopulus trichocarpa58.871.3684.01294forward
CNT30327286Quercus lobataAsparagus officinalis27.815.3891.37139forward
CNT30101075Quercus lobataOryza rufipogon28.620.489.51143forward
CNT30574682Quercus lobataOryza barthii26.419.390.15132forward
CNT30496069Quercus lobataDigitaria exilis26.216.4287.79131forward
CNT30176425Quercus lobataVigna angularis56.833.8986.27284forward
CNT30557628Quercus lobataPanicum hallii24.421.988.52122forward
CNT3065708Quercus lobataSelaginella moellendorffii25.837.1887.6129forward
CNT30114697Quercus lobataEutrema salsugineum56.846.3384.86284forward

Expression of CNT30702570

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MVGLLSELLEDVVDEAVHDPHGLAGDPDVWVNLLQHLEDVDLVSLHALLRALLLLVSGAGSAFLWQLLPCLRLLLRRSLLGHR*

>peptide 2 (59 aa)
PSHILKFPSLSSASKLSHRLGPLRDGVLSELTRQDQTDRGLDLPRGDGWPPERASRRCR*

Sequence

>CNT30702570
ACCCTAGTCACATATTGAAATTTCCTTCACTTTCAAGCGCTAGTAAACTTAGTCACCGCCTTGGTCCCCTCAGAGACGGCGTGCTTAGCGAGCTCACCAG
GCAAGACCAAACGGACCGCGGTCTGGATCTCCCGAGAGGTGATGGTTGGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATCC
CCATGGCCTTGCTGGAGATCCCGATGTCTGGGTGAACTTGCTTCAACACCTTGAAGATGTAGATCTTGTAAGTCTCCACGCTCTTCTTCGTGCGCTTCTT
CTTCTTGTCTCCGGCGCCGGCTCCGCCTTCCTTTGGCAGCTTCTTCCCTGCCTTCGGCTTCTTCTCCGCCGGAGCCTTCTCGGCCACCGTTGATTTCTTC
TCCTCTGCCGGCTTCTTCTCGGCGGGCTTCTTCTCAGCTTTGGGAGCCATTGGGAATTTTTCTCGGAAAGTGAAAAGGTAGAAAGGACTTTCGAATTGAG