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Detailed information on CNT30701199


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-49

BLAST vs NONCODE:
NONGMAT000508, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375418Quercus lobataArabidopsis thaliana9.9846.6184.55110forward
CNT30504865Quercus lobataNicotiana attenuata18.4239.6585.22203forward
CNT3092650Quercus lobataSolanum tuberosum8.0823.1884.2789forward
CNT30300261Quercus lobataTriticum aestivum16.2437.3781.56179forward
CNT3086283Quercus lobataVigna radiata28.312183.97312forward
CNT30441129Quercus lobataAegilops tauschii15.4339.4481.76170forward
CNT30253187Quercus lobataAvena sativa16.2433.4681.01179forward
CNT30611328Quercus lobataArabis alpina16.2439.2582.68179forward
CNT30360323Quercus lobataLactuca sativa25.6880.8682.69283forward
CNT30414711Quercus lobataPapaver somniferum18.4221.2382.27203forward
CNT3052246Quercus lobataAmborella trichopoda23.5921.5881.92260forward
CNT3024855Quercus lobataPopulus trichocarpa28.4953.4983.44314forward
CNT30325970Quercus lobataAsparagus officinalis27.7744.3579.08306forward
CNT30331117Quercus lobataDioscorea rotundata22.7826.581.67251forward

Expression of CNT30701199

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MTKIQKTKLLTRDQTPPPPIFIPKFQPFPIQNRTQPSTYKPITF*

>peptide 2 (71 aa)
MRPLIRFTPPLRAKRRMAGFVIPWMLSRRTLRCRFAPPFPSPLPPFPLPDILLGQFKICKHKLTEIEFRNY*

Sequence

>CNT30701199
CTTTAATCTATCTCAAATTCTCAATCAAACAAAGCTCAGCAACAAATCCAAACTAGTATCTGGCTAGTTTTGCAATTTCCAATCACTTTTTTCAACTTTG
GGAGCAAGATTAGTACAAGCTTTTAACTTTTTGAATGACAAAAATACAGAAAACCAAACTATTAACTAGGGATCAAACACCACCACCTCCAATTTTCATT
CCAAAGTTCCAACCATTCCCAATACAAAATAGAACTCAACCCAGTACTTACAAACCCATAACATTTTAATACAAGCTAGCAAAACCAAACAAATTCTAAA
TTTGCCAAATCTACCTTCGATTCCAAAACACCAACTATTCTTGCCAAAACCCTAACCACCAAACCCATACAAGGTCCTGCCCTGCCTCTTGAGAGCATAC
ACAACATCCATAGCAGTCACAGTCTTGCGACGCGCGTGCTCTGTGTAAGTCACAGCGTCCCTGATCACATTCTCAAGAAAGATCTTGAGCACTCCACGTG
TCTCCTCGTAGATGAGACCACTGATACGCTTCACTCCTCCTCTGCGAGCCAAACGACGAATGGCTGGCTTTGTGATTCCCTGGATGTTATCACGGAGAAC
CTTACGATGTCGTTTCGCTCCTCCTTTTCCGAGTCCCTTGCCTCCCTTTCCTCTTCCAGACATTTTGCTAGGTCAATTCAAGATCTGTAAACACAAATTG
ACAGAAATTGAATTTAGAAACTACTAAGAAATTTTCACCAAATTGCTACGAATTTTCATCGGAATTTAAACATTGCTGAGAAAATTGGGAATCGAACAAA
TATTGCCGATTAAAAACCCTAGAAATGTAAATTAACTCACAGATTGCTCGTGAATGGAAAATTAACAGGACTGAGAGATCAGATTACACAAACTTTTGAG
GAAATTTTAACAAAACAATGGAAAATCGAGCAATAAAGCAGCAAATTTGGGTATTGTACTATTTTAAAACCCTAGAAAGTCAGAACGATTCGAAATCCTA
AAATCTCATTGCATTCAGAGCATGAACTAGCTAGAACCAGACGAGTAAAAGCCATAAATATTCAAATTTGAAAGGAATTGAGGCTGTGAAGCGAGAAAGC
CC