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Detailed information on CNT30697827


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110165Oryza sativaOryza longistaminata10099.2999.86701forward
CNT30104491Oryza sativaOryza rufipogon100100100701reverse complement

Expression of CNT30697827

Peptides detected in this lncRNA

>peptide 1 (48 aa)
SKGGAAAMGGAVLTMARRPDSMAILALIVAVTIAITIVVRLYVPLQAT*

Sequence

>CNT30697827
GAGCAAAGGAGGAGCTGCTGCAATGGGAGGAGCTGTTTTGACCATGGCTCGTAGGCCTGATTCTATGGCCATTCTTGCTCTTATAGTTGCAGTTACCATC
GCGATAACTATCGTCGTGCGCCTATATGTTCCTCTGCAAGCAACATGATCTTCAGATGAACCCACGGTAAGTTCGCAAAACGCAACAGAGTTCTTCTCTG
ATCACTTCAAATTCTAAGCTGTATGTATGGAAAATCGACAGAGTTGAATTGTATAAGACGGGAAAAGGCCTACTAGTATGAGTTCTACTAGTTCATTTCC
TAGCCTGAATGCCAGGTGTATGATGAAATAGCAAGGCCTGGTACCAAGAGGCAAAAGAAGATAAGAGGTTCAGATTAATAGTTTTTCTCCTAAGTGGTAG
ATTGCTAGTCTTTCTTTTCTGTAGGGTACGTCACTGCTTCAGTGCTGAAGAACATCACAAAGGTTGTGACAGGGCAACCGGCAACAAAACTATGTTGAAA
TTGTGATGAACAACATGGCAGTTTATCTTAATTATTCTTCTCTCTTATCATTATATATCACCCTTGTTAGTAATCTGTAGTTTATCCTCTACTCTGGAAA
TGAATCAATAATCTAAGATTAGCCGATTATTCTACAGTTTCTGTGTTTGCTGCCAAAACAGCTAACAACTGATGAACAAGAAAAGTTATTATGGTTCAAA
T