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Detailed information on CNT30697675


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115796Oryza sativaOryza nivara16.1445.5392.02163forward

Expression of CNT30697675

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAGSTSSPVIVAWRNENGDITFCMIYSFVLGMEPMTHY*

>peptide 2 (80 aa)
QNEARDSVIVSFSSSVAAPARLLRVTPRPATTPDISDYIPSCARRRSPADRHSPCSTRRPPGARLPTPPVSHALRRLRDL*

>peptide 3 (29 aa)
MQGSLGSGSSKLAGNGWIHELAGDCCMEE*

>peptide 4 (36 aa)
MTALNPIIQSTTPHAGQSGQWQQQAGRQWLDPRARR*

Sequence

>CNT30697675
CAAAATGAAGCGCGTGATTCGGTGATTGTTTCTTTCTCCTCGTCCGTCGCCGCTCCTGCTCGCCTGCTCCGCGTGACTCCGCGACCGGCGACCACGCCTG
ACATCTCCGACTACATCCCGTCGTGCGCACGTCGCCGTTCGCCCGCGGACCGCCACAGCCCGTGCTCAACGCGGCGACCGCCCGGCGCTCGCCTGCCGAC
GCCGCCCGTTTCCCACGCACTCCGGCGACTCCGCGACCTATGACAGCCCTAAATCCTATCATCCAATCCACCACTCCCCATGCAGGGCAGTCTGGGCAGT
GGCAGCAGCAAGCTGGCCGGCAATGGCTGGATCCACGAGCTCGCCGGTGATTGTTGCATGGAGGAATGAAAATGGTGACATCACATTTTGCATGATATAT
TCATTTGTTTTGGGTATGGAGCCCATGACACATTATTAACTTCATATATATTATTATCAGTTGGTTTCTTCATTATGGTACGTATTTTTTTTAATTTTTC
CATGCACTTTTTCATATATTGTTATTAATTAGGGAGATGATACTTATATGTATTGGGTATGCAACTATTTAGTATAATATTGTTGAGCTATACATGTCGA
TATTAAGCAAAGAAAGTTAGGAACCCTCTCGTTTTTTCTCTAGCTCCGCCCAGTGCCTGTGCCTGCTCTTGTTCTGTCTATTACTTTTGTAAATACGGGA
AGGCAAGACACTAATGGGTGGGTGCATATGGTAAAAGAGGGCTTCGCATCCTCTGCCGTTCCAACTGAAATGGCATAGAGCTACAGTGTCAAGCCGTTGG
GGCATTTATATCTGTTGGATAAGTTTTGGATGTTCGAGATTAAACGCTACAGTAACGACGAAAATAAGCAAAAACATTTTTTACTGTAGCTACAGTTTTC
ATTGCATCAGCAGCATGTTACTGTAGCTTCCTCACGTTTCACTGTGCGCCTCTGCCGTTCTCCCCCCAACGGCACAGGATGGGAACCCGGTAAAAGAGGG
GTGGTTAACA