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Detailed information on CNT30696576


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-40

BLAST vs NONCODE:
NONGMAT001327, E-value = 5e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670612Oryza sativaSetaria viridis45.2350.597.55204forward
CNT30522472Oryza sativaSetaria italica63.1951.9194.39285forward
CNT30317753Oryza sativaCorylus avellana46.3430.0384.69209forward
CNT30549690Oryza sativaIpomoea triloba41.2444.2983.87186forward
CNT30703567Oryza sativaQuercus lobata43.0238.4280.41194forward
CNT30375418Oryza sativaArabidopsis thaliana14.1927.1287.564forward
CNT30617135Oryza sativaSesamum indicum47.0121.1484.91212forward
CNT3069058Oryza sativaQuercus suber41.6921.4980.85188forward
CNT30197103Oryza sativaPisum sativum21.7324.6284.6998reverse complement
CNT3042757Oryza sativaPrunus dulcis47.0134.9881.6212forward
CNT30186872Oryza sativaSecale cereale47.8943.2992.13216forward
CNT30286361Oryza sativaTriticum aestivum61.6450.8294.6278forward
CNT30220695Oryza sativaHordeum vulgare34.1535.3297.4154forward
CNT30387206Oryza sativaTriticum turgidum61.4249.6493.86277forward
CNT30565712Oryza sativaActinidia chinensis43.0264.8887.11194forward
CNT3086297Oryza sativaVigna radiata44.3517.279.5200forward
CNT30553196Oryza sativaOryza glaberrima63.8651.6196.18288forward
CNT30441215Oryza sativaAegilops tauschii61.425094.58277forward
CNT30239976Oryza sativaAvena sativa63.4156.7595.1286forward
CNT30664872Oryza sativaTriticum dicoccoides61.4258.9492.06277forward
CNT3082467Oryza sativaBrassica juncea47.6729.9980.93215forward
CNT30261175Oryza sativaBrassica rapa40.3538.5682.42182forward
CNT30450127Oryza sativaSaccharum spontaneum47.8932.3493.98216forward
CNT30143346Oryza sativaLolium perenne61.8647.8692.11279forward
CNT3015042Oryza sativaZea mays58.0944.2695.04262forward
CNT30229571Oryza sativaAnanas comosus46.7851.2193.84211forward
CNT30685043Oryza sativaTriticum urartu58.7659.5593.58265forward
CNT30720165Oryza sativaTriticum spelta31.4930.2891.55142forward
CNT30348363Oryza sativaEragrostis tef48.1238.9693.09217forward
CNT30620798Oryza sativaCajanus cajan43.6837.7482.74197forward
CNT30360323Oryza sativaLactuca sativa15.7420.2985.9271forward
CNT30645456Oryza sativaCannabis sativa44.3526.0881.5200forward
CNT30325970Oryza sativaAsparagus officinalis43.6828.5583.25197forward
CNT30148852Oryza sativaBrachypodium distachyon54.154.9592.21244forward
CNT30101875Oryza sativaOryza rufipogon65.6341.0594.93296forward
CNT30581397Oryza sativaEchinochloa crusgalli61.4247.1995.31277forward
CNT30496126Oryza sativaDigitaria exilis47.8931.7692.13216forward

Expression of CNT30696576

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LHRSQHKAEIPPESHRNPSSYTTTTTRTPPGRKEGRNQPPKP*

>peptide 2 (65 aa)
MRFTPPLLASLRIAGFVIPWMLSRSTFLCLFAPPLPSPLPPLPRPDMSDDDDESLETEEDLRFGDF

>peptide 3 (50 aa)
RYTEANTKQKFPPNPIETLAPTPPPPPARHQEGRKEGISRRSRRGCGPGA*

Sequence

>CNT30696576
CGCTACACAGAAGCCAACACAAAGCAGAAATTCCCCCCGAATCCCATCGAAACCCTAGCTCCTACACCACCACCACCACCCGCACGCCACCAGGAAGGAA
GGAAGGAAGGAATCAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGGATGACGTTC
TCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCGGGCTTCG
TGATCCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGCCTCTTCGCGCCTCCCTTGCCCAGCCCCTTGCCTCCCTTGCCACGGCCCGACATGTCTGACGA
CGACGACGAGAGCTTGGAGACGGAGGAGGATTTGAGATTTGGGGATTTTTT