Detailed information on CNT30696538


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555266Oryza sativaOryza glaberrima100.7710097.24652forward
CNT30597018Oryza sativaOryza meridionalis96.2988.2490.69623forward
CNT30371149Oryza sativaOryza glumipatula102.1691.5591.23661forward
CNT30103764Oryza sativaOryza rufipogon95.9880.8699.68621forward
CNT30577872Oryza sativaOryza barthii102.4788.5297.13663forward

Expression of CNT30696538

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRKLRPSAQSLLLVIVLVFLVVLAMPTALLGLGAGRRVLGDSSKAQSPGMHGFNCNLC*

>peptide 2 (32 aa)
MNLVSWEASSGLFYQELRGCYCGNCSNLEVGSM

>peptide 3 (29 aa)
MQLEVSDKEQIARLILKVYKSSLKFTPAS*

Sequence

>CNT30696538
AATATGCAATGCAACACCAGTTATTACTAAGAGATAAGGTGAAGGTTTATCAGGATTCTAGAATACAACTGTGGAAGTAAGAAACAAAGAGATGAGAAAG
CTAAGGCCATCTGCTCAGTCTCTTCTTTTGGTGATTGTGCTAGTATTTCTAGTGGTTCTTGCTATGCCAACTGCTTTGCTGGGACTTGGTGCAGGAAGGC
GGGTTTTAGGTGATTCGTCCAAAGCCCAATCGCCGGGAATGCATGGGTTCAATTGTAATCTGTGCTAAAATACCATGTCCACCACCACCGCCGCCTCCAT
CACCATGATGGAGTGCCTATGCAATTGGAAGTTTCTGACAAAGAACAAATAGCTAGGTTAATACTTAAAGTTTACAAGTCTAGTTTGAAGTTTACACCAG
CTAGCTAGGTTAATGCTAGTCATGCTAAATGCTGCCTGCTAATTGACACAAGTATGTGAGTAATACTAATTTCACTCAAGTGAAATAAACATGTAATGCT
ATACTGTACTTCAAGCTCATCTATGTGTATGTGTTAAATAATTAAGAGATGAATTTGGTGAGCTGGGAAGCCTCTTCGGGTTTGTTTTATCAGGAGCTGC
GAGGCTGTTATTGCGGAAATTGTTCGAACTTGGAAGTTGGAAGCATG