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Detailed information on CNT30696068


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001336, E-value = 8e-124

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554953Oryza sativaOryza glaberrima31.9625.7594.95317forward
CNT30370125Oryza sativaOryza glumipatula22.6864.8499.56225forward

Expression of CNT30696068

Peptides detected in this lncRNA

>peptide 1 (37 aa)
EIFLLSSSIFTPKNRSKSLSILSESNSFSSLSPKPSF*

>peptide 2 (56 aa)
GNIPLILLYLYPQKSEQIVEYLIRIKLVFEFISKTEFLISRIDFLREESDLFNPRL*

>peptide 3 (48 aa)
MMDLYIKLSVCVPRLIPGRGFYAQISSEITSEFPGVTSFNLFLFILNI*

Sequence

>CNT30696068
GGAAATATTCCTCTTATCCTCCTCTATCTTTACCCCCAAAAATCGGAGCAAATCGTTGAGTATCTTATCCGAATCAAACTCGTTTTCGAGTTTATCTCCA
AAACCGAGTTTTTGATTTCCCGGATCGATTTCTTGCGGGAGGAGTCCGATCTCTTCAATCCAAGGCTATAAATAGGACCCCCTAGTCCTCCTCTTTCGTT
TGCCCCCTCTCCCGTGGTCTCCCGTGCCTCGTAGCGCCGCCGCCACGTGCTCCACCCCGCCGTCGTCGCCGGCCGAGCTCCATCCGCGTCGTGCCGTCGC
CTCCGTCGTCGCCGCCGGTCGCCGTCACCGCCGTAAGGTGCGCGGGAGGGTGGAGAAGCCCGGCCGCTCTCTCCCCGCTGTCTCCGGTCATCGGAGCCCC
GTCGCCGCCGTCGACCGAAGCCGTGCCGCCGCTAGACCTCGTCGCCGGCCGTCGTCGTTCGTCGTTTGGTTCGAGGCTTGTCGTTTCCGTCGTTGCGAAG
GTTCGTGAGTGCGTCAGGAGTGTTCAGAAGATTAATTGAAGACCGATTATTGCAAGTTGAAGATAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACC
CCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGACCGTTAATTCCGCTGCTGTTTTTCTTTTCTTTTGTAAGTATGTAACGTTATTATTA
TGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGATTTTATGCACAAATAAGTTCGGAAATTACTAGTGAATTTCC
GGGCGTGACATCTTTCAATCTTTTCCTTTTCATCTTGAATATCTGAGGCAGCATATCGAGCAAGTTGCGTGAATTTATTCAAATATTCTTGTACTGTCAT
AAAACCTTGCCTCAATCTTCGAAATTCATTCTTTTTCATTCTAATCACAGCTGTAGGTACAAAAGCATCTCTAAAAGCTGTAGTAAATTCCG