Detailed information on CNT30695480


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001453, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596295Oryza sativaOryza meridionalis68.1484.1589.74770forward
CNT30603487Oryza sativaOryza punctata24.8795.987.9281forward

Expression of CNT30695480

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGLATLLHNMISLSHDYCNMLIRLLVFRHNGLIK*

>peptide 2 (35 aa)
MQLHTLLGAKAGVHTIALHMHILQDVMKTIDRRCL*

>peptide 3 (42 aa)
FGTLGRPPPPLVDLPHACPTADLGRRRREGEERERRKRRESR*

>peptide 4 (58 aa)
LVPWGAHLPLWSTSPMPALLQTWEEEEGKEKKGREGSGGNRGEEGNEGFDCRFPRRPR*

>peptide 5 (55 aa)
MLLVIITLYWSPSKECGFDVILWNSYCICITLALHLKLCCEPMVATVPVHHRILS*

>peptide 6 (66 aa)
IWYPGAPTSPSGRPPPCLPYCRPGKKKKGRRRKGEKEAEGIEVKKEMRGLIAASQGGLGDTTSECN*

Sequence

>CNT30695480
ATTTGGTACCCTGGGGCGCCCACCTCCCCCTCTGGTCGACCTCCCCCATGCCTGCCCTACTGCAGACCTGGGAAGAAGAAGAAGGGAAGGAGAAGAAAGG
GAGAGAAGGAAGCGGAGGGAATCGAGGTGAAGAAGGAAATGAGGGGTTTGATTGCCGCTTCCCAAGGAGGCCTAGGTGATACCACTTCGGAATGCAACTA
GAGTTCATCTCGTCATCGGTAAAGGCAAGTAAATGTAGCGGTGGTTTGCTACAGCTTTAACCTGTTATTTTCCTACCTTCACTTTAAAATTATATATCAA
TAACCAATAATCAAGATAGTATTACAGGTCGTAGCAAGGTTTTACCTATCTGAATCATTGCTTATCGTTATTGCACTGTTTATGGTTATACTTTATGCTC
TTGGTTATAATAACCTTATACTGGTCTCCATCTAAGGAATGTGGTTTCGATGTTATACTCTGGAATTCATACTGCATTTGCATCACACTTGCATTGCATT
TGAAGTTATGCTGTGAACCTATGGTTGCGACCGTACCGGTACATCATCGTATATTGTCGTAATACGATGCAGCTTCACACCTTGTTGGGTGCGAAGGCAG
GAGTACATACCATTGCATTGCATATGCACATATTGCAGGATGTTATGAAAACTATCGATCGAAGATGTCTTTGAGAAGTGTTTTCTTCTCTCGGAGTTGT
GAATATATGGATTTGATTGGTGATGTCATGATGTTTTAGTCCTTGGATATTGAACTTGTCTTTATGTGAATCATAACTTGGTATTTAATCAGCTATATAA
TAAACCTGTGGTTTAAATAGGTTGTTAAAGCCGTTTGCTTGCTGAGATTTATTCTCACCCCTTATAGTCTTTTCAGGTACTTGTTGTGACATGTTTGCAT
GAAGGGATGGGATTAGCTACACTGTTGCACAATATGATCTCACTTAGTCATGATTATTGTAATATGTTGATAAGATTACTTGTGTTTAGACATAATGGGT
TAATTAAATAATAGAGTTATCGACCATTGATTAACTTTTTTTTTCGAGGCTATCCCTATAAGTCAGTCAGTTGTTGTATCATAACCTTAATCTATATATT
GATGCTTCCGCTATATTGTTTTTAAAAAAG