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Detailed information on CNT30695229

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552747	Oryza sativa	Oryza glaberrima	45.21	21.27	89.16	406	forward
CNT30109186	Oryza sativa	Oryza longistaminata	44.54	30.67	88.75	400	forward
CNT30102620	Oryza sativa	Oryza rufipogon	44.54	34.25	88.5	400	forward
CNT30575420	Oryza sativa	Oryza barthii	53.67	23.91	86.31	482	forward
CNT30115521	Oryza sativa	Oryza nivara	88.75	71.1	88.33	797	forward

Expression of CNT30695229

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSEVFHVFFLMKMRWSYGKLLWQSKFFMWLELKGRCLMADNLQKRGFGDCSGAR*

>peptide 2 (35 aa)
MISRRSFRDCLRKVFGTLLLFRDCLRKLYGCAALW*

>peptide 3 (29 aa)
TVFRSYSYSKYWNIEVNYMFSLLTALQYL*

Sequence

>CNT30695229
ACGGTATTTAGGAGCTATTCGTATAGTAAATACTGGAATATTGAAGTAAATTATATGTTCAGCTTATTAACTGCATTGCAATATCTTTGATCTGGAGACG
GTTTTAATTTTCATTTGTGTGGTCGCATCCTTTAATTTATATAACTTCATAAGAATATACTCCAAAGTACATGCTGGTTTATGTATTTTTATGCCTTCCT
ATTCTAATTGTCTAATGGCTCTTGAACAATAGATGTAAACTACGATGTCTGAAGTTTTCCATGTTTTCTTCCTTATGAAAATGAGATGGAGCTATGGCAA
GCTGCTTTGGCAATCCAAGTTTTTCATGTGGCTTGAGCTGAAGGGAAGATGCCTCATGGCTGACAATCTACAGAAAAGAGGATTTGGAGATTGCTCAGGA
GCTAGGTGAATGTTGGCTTTCAGCTTCCCAGACCTCAATGTAGACTTGGCTGATTAGCAGATGATTTCAAGGAGAAGCTTCAGAGATTGTCTCAGAAAAG
TTTTTGGTACTCTTCTCCTCTTCAGAGATTGTCTCAGGAAGTTGTATGGCTGTGCAGCTCTTTGGTGACATCAAAGAGGAAATCACAATCTGGAGATAAT
AGGCGAAAGACGATTGGTATTATTCCTTTTGCAGTTTTTTCTCTCCCGCTCATTGTAACCGATTTCGACAGCTTCTTGTGGATGCTTAGTTTGTAACACC
ATCTCCTAATTTTAATGGATTTTCTTAGCCTACTCCTGGGCCAGTCTGGCTAAAATAGATGTAATCAGAAACATAACTTGTAAAAATAAAACCAATCATT
TTTATCCTAACAAAAGGCTGCTCAACACTGTAATAATTTATGTTGAAAAGATACTAAAGGAAGTGGCAAAACAGCATGTCTTTTGCTACTTTGTTCGG