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Detailed information on CNT30694435


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005669, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554971Oryza sativaOryza glaberrima50.6968.7598.48330forward

Expression of CNT30694435

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SPSTSEHIEQHNPSPPSPQLPTIPKICSQST*

>peptide 2 (45 aa)
MPLGVLKIKGMLFMTMTCIMEDGMSRCMQGSGLVALLVNLEYWST*

>peptide 3 (60 aa)
HLQPVNTSSNTTPLHLHLNCQPFPRFVANQPENGDVEHHHQLGRKEDCRFGEELDLQGEE*

>peptide 4 (29 aa)
MYAGEWSSSFVSEPGILEHLVTKVLLAPA*

Sequence

>CNT30694435
TCACCTTCAACCAGTGAACACATCGAGCAACACAACCCCTCTCCACCTTCACCTCAATTGCCAACCATTCCCAAGATTTGTAGCCAATCAACCTGAAAAT
GGTGACGTAGAGCACCACCATCAGCTCGGTAGGAAGGAGGACTGCCGGTTTGGGGAAGAACTGGACCTGCAGGGGGAGGAGTGAAGCTCATTAGCTGCAA
ACTTGTGGGGGATCAATCAAGAAAACATCACCCACCAACAGAAAGGGAGCAGGAAGGGAACTAGGGGCGGAGTCGGGTTAGTGGGGAGTGCCAGCTAGTT
TCGATTTGAACTACGAGGATTCAGATGCAAACATTTCTGGGCAAGCCAGTGAGTTAAGTGGTGGGTTGGAGGATCAGTACTATGCCCCTTGGTGTGCTGA
AAATCAAGGGGATGTTGTTTATGACTATGACATGTATTATGGAGGATGGGATGAGTAGATGTATGCAGGGGAGTGGTCTAGTAGCTTTGTTAGTGAACCT
GGAATATTGGAGCACCTAGTGACCAAAGTATTGCTAGCTCCTGCTTGAAACTTGTATTATTAATGGGTGAACGTGTAAGGCCCTGTTTCAGACTTTAGCC
CTGCGTGACATGGTATTGTAATGTTATCTGAACCTTCTAGCTATTATTCTG