« Back to Oryza sativa search


Detailed information on CNT30693801


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674495Oryza sativaSetaria viridis35.4826.1297.9899forward
CNT30163367Oryza sativaPistacia vera20.076.7287.556forward
CNT30186107Oryza sativaSecale cereale39.0725.4797.25109forward
CNT30226219Oryza sativaHordeum vulgare38.7146.1597.22108forward
CNT30240026Oryza sativaAvena sativa79.9342.2385.65223forward
CNT30231835Oryza sativaAnanas comosus34.7714.9298.9797forward
CNT3066775Oryza sativaLeersia perrieri37.9927.698.11106forward
CNT30108786Oryza sativaOryza longistaminata34.772.8798.9797forward
CNT30102870Oryza sativaOryza rufipogon29.0319.7610081forward
CNT30580488Oryza sativaEchinochloa crusgalli22.583.2293.6563forward

Expression of CNT30693801

Peptides detected in this lncRNA

>peptide 1 (92 aa)
GGQRKSLSGGELGDGLGALGDGVLGELAGEDEADGGLDLAGAASPPWASSPPPGPSPPRAPPPRASSPPASSPPWAPWMAASLFLDFAGCVSL

Sequence

>CNT30693801
GGAGGACAGAGGAAAAGCCTAAGCGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGG
ACGGAGGTCTGGATCTCGCGGGAGCCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGCCGGGGCCTTCTCCGCCGCGGGCTCCTCCTCCGCGGGCTTCTTC
GCCGCCGGCTTCTTCTCCGCCTTGGGCGCCATGGATGGCTGCTTCTCTCTTCTTGGATTTCGCTGGGTGTGTGAGCTTG