Detailed information on CNT30693279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000206, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596883Oryza sativaOryza meridionalis24.83100.490.96498reverse complement
CNT30106377Oryza sativaOryza longistaminata26.9298.3694.07540reverse complement
CNT30101365Oryza sativaOryza rufipogon25.3710094.89509forward
CNT30577858Oryza sativaOryza barthii54.9477.8295.11102reverse complement

Expression of CNT30693279

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVGCEHMVLMVVLMTIKDRFTSFGCETLTVPTTSQRGQRLYLLYSMVHCGALD*

>peptide 2 (37 aa)
MMWGCVLWVQWYTSDQSKTIRIAGPAVMGGSNNVFRD*

>peptide 3 (30 aa)
MVHCGGLCCTRGTVTAPFRGTMVVLRHMVT*

>peptide 4 (29 aa)
NMTFPLILLRGNIPLILLYLYPQKIGANR*

>peptide 5 (47 aa)
MSYTHLAIIHQRKSSTVMLMVWRIRYSPGQAACGVESSAPFILFSAA*

>peptide 6 (71 aa)
MSFVISFILLTIIKDAITGNNLFSSWFGMVYSWFGDRTVQPGWLFRMVGPMQQGMLYSVGLILFNYHLTVL*

Sequence

>CNT30693279
CAAATATGACCTTTCCCCTTATCCTCCTGAGGGGAAATATTCCTCTTATCCTCCTCTATCTTTACCCCCAAAAAATCGGAGCTAATCGTTGAGTATCTTA
TCCGAATCGAACTCGTTTTCGAGTTTATCTCCAAAACCGAGTTTTTGATTTCCCGGATCGATTTCTTGCGGGAGGAGTCCGATCTCTTCAATCCAAGGCT
ATAAATAGGACCCCCTAGTCCTCCTCTTTCGTTTGCCCCCTATCCCGTGGTCTCCCGTGCCTCGTAGCGCCACCGCCACGTGCTCCACCCCACCGTCGTC
GCCGGCCGAGTTCCATCCGCGTCGTGCCGCCGCCTCCGTCGTCGCCGCCGGTCGCCGTCACCACCGTAAGGTGCGCGGGAGGGTGGAGAAGCCCGGCCGC
CTGACCCTCGAAGCCGCCGATCACCGGAGCCCCGTCGCCGCCGCCAACCGAAGCCGCGCCGCCGCTAGACCTCGTCGCCGGCCGTCGTCGTTCGTCGTTT
GGTTCGAGGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAAGCAAGTCACATAGATCCCAAACAACCCTTTGAGCATATTGATCCCGTTTAAAGCTACT
GTTTTTATTTCAACTGTGCATTTATTTTCGAATGTCACCGGGTGGTGAGCCTTTCCCATTTAATTATGGCCAAGGATGACTTTATTTTCCTATGGGTTAT
AATTTGATTAGCTAGAACCTTATATATTGGTTTGGTTCAGCTAGATGCTTATAATAGATGCTTAGCCATGCTTAGAAGCAATAGCTCACTAATGGGATAA
ATCATGCTTCACTATCACTTATGGATATTTAATGGAAGTTCACGACGGTTGATCGTGATTGGTTAATTAATTATTTGCCAACTAAAACCTGATAATGGTG
GGTTGTGAGCACATGGTTTTGATGGTCGTGCTCATGACAATTAAGGACCGGTTCACGAGTTTCGGTTGTGAAACATTAACCGTGCCAACCACAAGCCAGC
GTGGGCAACGGCTTTATCTTTTGTATAGCATGGTTCATTGCGGGGCACTAGACTGAGAAGTGGCGGAGATAAGCCCACGGGGGTCGCTGGGGAGTCCATG
CCTAGTTTATAAGGGGGTGATTATGATCCAGGAATGGTGCACTGTGGTGGATTGTGTTGTACGAGAGGTACTGTCACAGCTCCTTTCCGAGGTACCATGG
TGGTATTGAGGCACATGGTGACATGATGTGGGGCTGTGTCTTGTGGGTACAGTGGTACACCTCTGATCAGAGTAAAACTATTCGAATAGCCGGGCCCGCG
GTTATGGGCGGGTCTAACAATGTCTTTCGTGATTAGTTTCATACTTCTCACCATAATAAAAGATGCTATAACTGGAAATAATTTGTTTAGCTCCTGGTTT
GGAATGGTATATTCCTGGTTTGGAGATAGAACTGTGCAGCCGGGATGGTTGTTCAGAATGGTTGGGCCTATGCAACAGGGTATGTTGTATAGCGTTGGAT
TAATATTGTTTAATTATCACTTAACTGTTTTATAATTCTCAAATATTTGCTAAAGGCTGCTTTTGCAAATGAGCCCTATATTATGCCATTCTTTGGTATC
CTTTTGCACATGCATATTTGCTGCGTGACTTGCTGAGTATGTCATATACTCACCTTGCAATCATTCATCAGAGGAAGAGTTCTACAGTGATGCTGATGGT
GTGGAGGATTAGGTATAGCCCTGGTCAAGCTGCCTGTGGAGTGGAGTCGTCTGCGCCGTTTATTTTATTTTCCGCTGCTTAGATCTTTATTGATTGAGAG
GAACTATCTACCTCTGTAATGACATTTTATTCGCTTATTAATTAGAGTAATAATTGTACTCTATTATTAATTTGTTATTGTGTGCCTCGGCTGATTCCTG
GACGAGGGTTCACACACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACAATATACCATTCCAAACCAGGAGCTAATCAAATTATTACCA
GTTATA