Detailed information on CNT30692993


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676466Oryza sativaSetaria viridis21.3535.582.22180forward
CNT30553387Oryza sativaOryza glaberrima49.746.8799.28419forward
CNT30465762Oryza sativaSaccharum spontaneum39.8652.582.74336forward
CNT30595784Oryza sativaOryza meridionalis27.0510097.81228forward
CNT30370065Oryza sativaOryza glumipatula10099.4199.53843forward
CNT30101295Oryza sativaOryza rufipogon47.2164.8299.75398forward
CNT30576181Oryza sativaOryza barthii89.6810099.74756forward

Expression of CNT30692993

Peptides detected in this lncRNA

>peptide 1 (57 aa)
HYWLLTSSHGCGDGQISLQAKVQENVARQFAQQEQEHSPHDSLEGILPENSSSTTSP*

>peptide 2 (61 aa)
LIIGCSHRHTAVVMAKYPCKLRYKRTWPDNLLNRSKSIAPMTHLKVFYLRTLALQLLPDIT*

>peptide 3 (29 aa)
MRWLWIGYHPCSRLGGQTPALHRRCHQDP*

>peptide 4 (32 aa)
MTAAPSATCKRYASPDMCSKNCICAETWCTFS*

>peptide 5 (55 aa)
MSTAVGGGVVLLAVTDWGTEDSMAGAGWYSTCGYDGVGGSRARRRVRSMKGMMAI*

Sequence

>CNT30692993
CTCATTATTGGTTGCTCACATCGTCACACGGCTGTGGTGATGGCCAAATATCCTTGCAAGCTAAGGTACAAGAGAACGTGGCCAGACAATTTGCTCAACA
GGAGCAAGAGCATAGCCCCCATGACTCACTTGAAGGTATTTTACCTGAGAACTCTAGCTCTACAACTTCTCCCTGACATAACATAAGTAGTCTGCTTACA
CCTCGAAGATCAGCTTCCTGAACTTCTCCATGTGCTCAGCCTGCAATGAGATGGCTATGGATAGGCTACCATCCTTGTTCGCGCTTGGGAGGACAAACGC
CAGCCCTTCATAGGCGATGCCACCAGGACCCATGAACACTGGTCTTCCCCATCCAAAATCTGCATCATGAATTGGCAAGCGCACCCAGCTGGTGAGCCCG
AGGTTCGGACACCGGAAAGTGTGTGCTCCACGGACCAATGCTGATAAATCAGGCTGCAGCTCCAGGTAGTCCAATGCTGAGCGGCAGTAGCTATCGTTCA
TCCTATCTAGCGCCTCTTGGATGACTGCTGCTCCATCTGCCACGTGCAAGAGATACGCATCGCCAGACATGTGCAGCAAGAACTGCATATGTGCTGAAAC
GTGGTGCACCTTCTCCTGATGGGAGCTGCGAACGCAGTCGACCAAGGTCTGAGCGGGTAAGCTTGAAAATGTCCACAGCAGTTGGAGGTGGTGTTGTCTT
ATTAGCAGTAACAGACTGGGGTACGGAGGACAGCATGGCTGGGGCAGGCTGGTACTCAACATGTGGGTATGATGGAGTTGGTGGATCTCGGGCTCGTAGG
AGAGTGCGGTCAATGAAGGGCATGATGGCAATTTGAGTTCCTC