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Detailed information on CNT3069058


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 6e-47

BLAST vs NONCODE:
NONGMAT000508, E-value = 3e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Quercus suberOryza sativa21.4941.6980.85188forward
CNT30671259Quercus suberSetaria viridis19.0940.8383.83167forward
CNT30523218Quercus suberSetaria italica25.2640.4882.35221forward
CNT30317753Quercus suberCorylus avellana33.8342.5382.09296forward
CNT30546681Quercus suberIpomoea triloba32.861.0680.84287forward
CNT30703567Quercus suberQuercus lobata51.5489.3194.24451forward
CNT30375418Quercus suberArabidopsis thaliana13.0348.3182.46114forward
CNT30616210Quercus suberSesamum indicum35.4324.7881.29310forward
CNT30196946Quercus suberPisum sativum33.7141.285.76295forward
CNT30504865Quercus suberNicotiana attenuata17.0329.185.91149forward
CNT30712284Quercus suberGlycine max15.4328.7287.41135forward
CNT3042757Quercus suberPrunus dulcis31.7745.8783.09278forward
CNT30186872Quercus suberSecale cereale27.3147.982.01239forward
CNT30305698Quercus suberTriticum aestivum30.5148.9983.52267forward
CNT30221015Quercus suberHordeum vulgare21.4935.6783.51188forward
CNT30397255Quercus suberTriticum turgidum24.5744.3382.33215forward
CNT30565712Quercus suberActinidia chinensis10.5130.7788.0492forward
CNT3086283Quercus suberVigna radiata34.420.2685.71301forward
CNT30553196Quercus suberOryza glaberrima21.4933.6981.38188forward
CNT30172429Quercus suberTrifolium pratense33.1444.8281.03290forward
CNT30441099Quercus suberAegilops tauschii25.643.4183.48224forward
CNT30255921Quercus suberAvena sativa25.639.8683.48224forward
CNT30656490Quercus suberTriticum dicoccoides25.636.2582.14224forward
CNT3059678Quercus suberArabidopsis lyrata19.5435.5582.46171forward
CNT3082467Quercus suberBrassica juncea19.4323.7185.88170forward
CNT30261175Quercus suberBrassica rapa11.4321.1985100forward
CNT30611328Quercus suberArabis alpina19.4337.2882.35170forward
CNT30470770Quercus suberSaccharum spontaneum25.9434.1982.82227forward
CNT30135649Quercus suberLolium perenne26.6345.4281.97233forward
CNT3015042Quercus suberZea mays19.4328.7282.35170forward
CNT30229571Quercus suberAnanas comosus15.5433.0184.56136forward
CNT30211420Quercus suberHelianthus annuus20.836.6983.52182forward
CNT30687044Quercus suberTriticum urartu26.6322.8781.97233forward
CNT30348363Quercus suberEragrostis tef25.640.2281.7224forward
CNT30620798Quercus suberCajanus cajan19.0931.9987.43167forward
CNT30596905Quercus suberOryza meridionalis19.4327.9681.18170forward
CNT30357929Quercus suberLactuca sativa35.7769.8781.15313forward
CNT30370989Quercus suberOryza glumipatula23.5432.9682.04206forward
CNT30645276Quercus suberCannabis sativa31.6651.384.48277forward
CNT3052246Quercus suberAmborella trichopoda29.8321.6678.54261forward
CNT3024855Quercus suberPopulus trichocarpa19.4328.9685.29170forward
CNT30325970Quercus suberAsparagus officinalis30.0638.1280.23263forward
CNT30331117Quercus suberDioscorea rotundata20.819.2281.87182forward
CNT30147953Quercus suberBrachypodium distachyon25.625.7883.04224forward
CNT30101647Quercus suberOryza rufipogon25.624.0380.8224forward
CNT30577582Quercus suberOryza barthii19.4326.7381.18170forward
CNT30581397Quercus suberEchinochloa crusgalli19.4328.9681.18170forward
CNT30117618Quercus suberOryza nivara21.4941.7881.91188forward
CNT3050826Quercus suberCucumis sativus13.634.982.35119forward

Expression of CNT3069058

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSPLIRLTPPRLAKRRMAGFVIPWMLSLRTLRCRFAPPFPKPLPPFPLPDIFSLSLSLAPCF*

>peptide 2 (54 aa)
PGNKIGTKLGQIGSANRAPNKNSHDINSKQNNSKIIEREYHESLNFISVYSRFT*

Sequence

>CNT3069058
CCGGGTAACAAAATTGGAACCAAGTTAGGGCAAATTGGATCTGCAAATAGAGCACCAAACAAGAACTCTCATGATATAAACTCAAAACAAAACAACAGCA
AAATAATTGAAAGAGAATACCATGAAAGTTTAAATTTCATATCAGTCTATTCACGATTCACTTAAATCAACATCAATTAAGTCCAATTACAACAAAAACC
ACCTAATTTGAAACAGAATCCAAATACTAAACCCTAACCCTAACCCTAATTCTAACCTCCTTCTTAGCCTCCAAAACCATAGAGAGTCCTGCCCTGCCTC
TTCAGAGCGTAAACAACATCCATAGCAGTAACAGTCTTGCGGCGAGCGTGCTCGGTGTAGGTCACAGCATCGCGGATCACGTTCTCCAAGAAGATCTTGA
GGACGCCACGTGTCTCTTCGTAGATGAGCCCGCTGATACGCTTGACTCCGCCACGCCTCGCCAAACGCCGAATGGCAGGCTTCGTAATTCCCTGGATGTT
ATCCCTCAGAACCTTACGGTGCCGTTTCGCACCGCCCTTTCCCAAACCCTTGCCTCCTTTTCCTCTTCCTGACATTTTCTCTCTCTCTCTTTCTCTGGCA
CCTTGTTTTTGAAAGACTGTTTTGTTTTTGTTTTTGATGGGAGAATGGGAGAGAAGGTTGGTGAGTTTATATAAGGGTAGGAGGTGGTGGTGTGGCCGTT
GGATGAGGGAGCGATCCCTGTGAATTATAAGTGTGGGGGGTTTTGGCCGTTGGATTTTTAGTGATTGGATTTCATTGGTGGAAATTTGAAGGTGCGGATC
GAGACGATTTTGCCTTTTTGGTGGGAATTTTGTCTCTGCGAGAAAACACACCTTTAAGCGCCGACGAAAAACAAC