Detailed information on CNT30690337


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FZB8|Y5181_ARATH, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552056Oryza sativaOryza glaberrima34.2530.882.57499forward
CNT30109956Oryza sativaOryza longistaminata10.9131.2490.57159forward
CNT30115582Oryza sativaOryza nivara25.8866.7396.29377forward

Expression of CNT30690337

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MDGRSDGRWRLRRRRPKGRLGYPIQAIQISMVLNCCISKHELQDLLIDILTLG*

>peptide 2 (64 aa)
MKGVPDPKFTRHTYMNSSGATVSTSFQIVSDESCFVKFTVVQKLTPMWSPNRNKEPFSDDLSPS*

>peptide 3 (50 aa)
IPPISHQPWMPRRCPVSIGDPLASPLAPRALLRPGARPSEEASPRADHGW*

>peptide 4 (30 aa)
MYNSSVGHQGNFSGFLLAYLQLLSCTVTEY*

>peptide 5 (67 aa)
NPPNLPPAMDAAALPCFDRRSACFAASSPSPTTAGRAPERGGIAARGSWMVGRMAGGGCGADDRKAG*

>peptide 6 (44 aa)
MLMLSHEKPLLMVDAFWTMSVGTWKLSFPGSLFTVWLVVRLSQG*

>peptide 7 (34 aa)
MSGGSSELFVLHRVKVVPDSCRYRSLRYTLSTCK*

Sequence

>CNT30690337
AATCCCCCCAATCTCCCACCAGCCATGGATGCCGCGGCGCTGCCCTGTTTCGATCGGCGATCCGCTTGCTTCGCCGCTAGCTCCCCGAGCCCTACTACGG
CCGGGCGCGCGCCCGAGCGAGGAGGCATCGCCGCGCGCGGATCATGGATGGTAGGTCGGATGGCCGGTGGCGGCTGCGGCGCCGACGACCGAAAGGCCGG
CTAGGTTATCCAATACAAGCTATCCAAATTTCAATGGTGCTGAACTGCTGCATTTCGAAACATGAATTACAAGACTTGCTTATTGATATTCTTACACTAG
GATGATCCTGGGATTCTGTTTGCCATCATAGTAGTTGCATTTCACACCTTCCCAGGTTTACCATCGATGGTGTCAGTGGTGAGGTTTTCCATCCGAACAA
GCGAGTAAGCCTCAAAGGCGTTGATGAGTGGTGGGAGCTCCGAGCTGTTTGTCTTGCACAGGGTGAAAGTTGTACCTGACTCATGTAGGTACCGGTCCCT
CAGGTACACGCTGTCCACCTGCAAGTAGGACGGTGAGAAGGCCTGGTGCAGCTCGTTGCCATCACTATAGATTTGGAACGTCCGATTTGGGCGGTTCTTT
TCTATCTCAGCAAAGTGGAAGATCGGGAGAAGCTCCAGGCTCTGGCCATTCAGGTTATCACCGGCCGTTATGCTGATGTTGAGCCATGAAAAACCGCTGT
TGATGGTGGATGCCTTCTGGACGATGAGTGTTGGCACCTGGAAGTTGTCATTTCCTGGGAGCTTGTTCACTGTTTGGTTGGTGGTCAGGTTGAGCCAGGG
ATAGGAGTAGCATTGGGCTGCTTCCCAGAAACGATCAAAGAGATCAGTTGGATATCTGTATCACCACGGCAACATAAATGGAGAAGCAATTGATACAGGG
CACCTACGGTTGCAATATGGTATAATAAAAGAAACAGAAAAAAAAGAATCTTCATCTCACCTTGTGATGAAATCATCGACTGCCCCAAATCTCATTCGAG
TAAAGTAGCTTACAGACACAAAAAGATTCAGGAATGGGTACATTGGATCATCCAATTGCCGCAACTCCAATGCAGAAATGAAAGGGGTTCCTGATCCAAA
GTTTACCAGGCACACATATATGAACTCGTCCGGAGCAACCGTGAGCACCTCTTTCCAGATAGTGTCTGATGAGTCCTGTTTTGTCAAGTTCACCGTTGTC
CAGAAGTTGACGCCGATGTGGAGTCCAAACAGAAATAAGGAACCGTTCTCTGACGACCTGAGTCCATCGTAGTTTCCGTAAGTGAAGGTGGCTCTGATGA
GATACTTCTTGCTACGGTTGGTTGGTAATGTATAACAGTTCCGTTGGCCATCAGGGAAACTTCTCAGGGTTTCTTCTTGCTTATTTGCAGCTTCTTTCAT
GTACTGTGACAGAATACTGAAGGTCTTGCCGCCCTTTATATATCCTTTGTCAGAGAC