CANTATAdb - search

Detailed information on CNT30690067

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552115	Oryza sativa	Oryza glaberrima	100	45.32	99.59	489	forward
CNT30109530	Oryza sativa	Oryza longistaminata	99.59	53.93	98.77	487	forward
CNT30574809	Oryza sativa	Oryza barthii	92.64	51.48	99.56	453	forward

Expression of CNT30690067

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYTSYFNLVQLVGRFFNSANPAKMCPMHTYILY*

Sequence

>CNT30690067
AAGAATCGAGTGTGGCGATACAAGATCAGACCATTTGAGGACTGGTGACTGTCGACGAGGCCGGCGTTCGAGAAGCAATTAAGAAAAGCTTTTGATTCGC
TGTGTTTTATGTTAAGCTGTCTAGTTTGGAAGGAGAGGAGATGCTAGAATTTTCGACCAACGAGTGAAATCTACCTTGCAGCTGCTTGGGGAAGTCAAAG
AGGAGATCATGCTCTGGAGAGAAGCTGGAGTGTTCATGAATCCTTAGGAGTAGTTTGCAGCCCTAGCGAGTACCAGCTGCTGCTGGCATGTTTCTCATCA
GGTCTCGGCAGAGGCTCGTTGCTTTTCTTGTATCTAACTTTGTAACATTATGTATACATCTTATTTCAACTTAGTACAATTGGTTGGCCGCTTTTTTAAT
TCGGCCAACCCAGCCAAAATGTGTCCGATGCATACATATATTCTGTATTGAGATCCCAAAAGACAGAAATATCACACGGTTATGATGCC