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Detailed information on CNT30689968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105452Oryza sativaOryza longistaminata101.7281.5894.47651forward
CNT3099914Oryza sativaOryza rufipogon10050.2499.69640forward

Expression of CNT30689968

Peptides detected in this lncRNA

>peptide 1 (74 aa)
RQHFHRHLAIIIHGFSSGPLALATLRCLGIGNWESGEIQRWEITWGMPDRCDAAERRRRAERQGARIGAAFSPP*

>peptide 2 (63 aa)
MDGHSHVSSSADLAGLCRATHCPTISWLTCYDYTYIPSNDMHESQTQTAPISLSSSLVSENAH*

>peptide 3 (51 aa)
KTTFPSPSRHNNPWLFLWPVSPSHITLFGDWELGIGRDSEMGDHLGHARSM*

Sequence

>CNT30689968
GAAGACAACATTTCCATCGCCATCTCGCCATAATAATCCATGGCTTTTCCTCTGGCCCGTTAGCCCTAGCCACATTACGTTGTTTGGGGATTGGGAATTG
GGAATCGGGAGAGATTCAGAGATGGGAGATCACCTGGGGCATGCCAGATCGATGTGACGCCGCCGAGCGCCGGCGGCGAGCGGAGCGGCAGGGGGCGAGG
ATTGGCGCTGCGTTCTCCCCTCCCTGAATTCTTCCGCCCCGTTTCTGGATTTCTCGGTCGCAATCCAGGCTGAGGCTCAGCAGCAGAAGCAGCAGCAGTA
GTACCCCATCATCATGCATCCATGGTGAGAGATGGATGGTCACTCACATGTGAGCAGTAGTGCCGATCTTGCCGGACTCTGCAGGGCCACCCACTGCCCA
ACCATTTCTTGGCTAACTTGCTACGACTACACATATATACCTAGCAATGACATGCATGAAAGCCAAACACAAACTGCTCCAATATCTCTATCTTCTTCTT
TAGTTTCTGAAAATGCACATTGACATCATTTCCTCTTCAATGGAGTAGATAAACTAGATAAGCTATGTTTGAGGGATAAATTTAAGTATGACACATAAAT
GGGGGCTATTGCTAATAATATAATTATACTCTTTCCATCC