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Detailed information on CNT30689907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369421Oryza sativaOryza glumipatula93.2476.9299.48773forward
CNT30115789Oryza sativaOryza nivara93.1283.9199.87772forward

Expression of CNT30689907

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PIPFSSSFFFSSSSSSPSHPVTTATKLPAAGDAV*

>peptide 2 (31 aa)
SHSFFFIFLFLLFFFFSFSSCDDGDEATCRW*

>peptide 3 (73 aa)
MGARMQLFELFNQRAITDRLIYSGTPACVLGSEHACMHTCMNAANRCTSIVIQQGMLFMCRRLVGLVHNNVKM*

Sequence

>CNT30689907
ATCCCATTCCTTTTTCTTCATCTTTCTTTTTCTCCTCTTCTTCTTCTTCTCCTTCTCATCCTGTGACGACGGCGACGAAGCTACCTGCCGCTGGTGATGC
TGTGTGATGCTGTGGCTGCTTCATTAATTGGGGAAAGTCTGGTGGCCACACAGGTTATCACACACGGGTGAAGGCTGAAGTGAACAAGCGTCGTGTGTCT
CGAAATACAAAGAGATAATGGAATTGGAAGTAGCTAGAAAAATTGTGGCATGACAAAAATCAAACAAGGGGTAGGTGCGAAATTAAAGAGATTATCGCCT
TCCGAGTGCCAGAAATGTTGGAGAAGAAGTTAGATACGATCTACATAGCCTGTATATAAAGGCACAATGATAAAGACATTATGAATTAATTAACTGGGGG
AAAAAGGATAGCTATGCATTAATATGCATATCTAATTGGCAGCATATAGCTCAATTGCCCAACGTGGGGCACTGATCTGCTGCAAATTACTATTATATAT
CCCTCTGACTCTAGGGATTGCATTGTCACACATGGGGGCAAGGATGCAACTGTTTGAACTATTCAATCAGAGAGCCATCACGGATCGTCTTATATATTCA
GGAACACCCGCATGTGTTCTTGGCTCAGAGCACGCATGCATGCATACATGCATGAATGCTGCAAATAGATGTACATCGATTGTGATTCAGCAGGGCATGC
TGTTCATGTGCCGGAGGCTTGTCGGTCTAGTACATAATAATGTGAAGATGTAAATGATACATGATCCGGGAAATATATGTATGTGTTGCAGAGCTGCAAG
AAACAAGTAATGGTTGACATTTTCTGCTA