CANTATAdb - search

Detailed information on CNT30689883

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000135, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3099847	Oryza sativa	Oryza rufipogon	31.57	79.15	100	167	forward

Expression of CNT30689883

Peptides detected in this lncRNA

>peptide 1 (62 aa)
ASPRRRLAGSISEGWRRRRPTATPAAAPPPAAEAGLAPCPAVYQSRFLLRVFVSPRRRTRRQ*

>peptide 2 (66 aa)
LTSPSPGRLDQRRVEAAQANRDPRGGAATCRRSRAGSLPGSVPVQILASSVRFAKATYPSTVRRMW*

>peptide 3 (94 aa)
PHLAVAWPARSAKGGGGAGQPRPPRRRRHLPPKQGWLPARQCTSPDSCFECSFRQGDVPVDSEAHVVTSSITMVNLPTQSSKMLIGVEFACVRS*

Sequence

>CNT30689883
GCCTCACCTCGCCGTCGCCTGGCCGGCTCGATCAGCGAAGGGTGGAGGCGGCGCAGGCCAACCGCGACCCCCGCGGCGGCGCCGCCACCTGCCGCCGAAG
CAGGGCTGGCTCCCTGCCCGGCAGTGTACCAGTCCAGATTCTTGCTTCGAGTGTTCGTTTCGCCAAGGCGACGTACCCGTCGACAGTGAGGCGCATGTGG
TGACTTCATCAATCACCATGGTGAATTTACCGACCCAGTCTTCGAAGATGCTCATTGGGGTAGAGTTTGCGTGCGTGCGTTCATAGGGGTGAGTGTGCGT
ACGTTGTGAGTGTCTACGTTGTACTGTGTAATTCTTAAAAAAAAGTTCATGAAGGGTTTTGGAGATTTATTAAGAAAAAAAGAACAACTAAACATTAATG
TAACTAGTGAGTGACGCAAAGGATGAAAAAATGACATCCTTAAGATATTAGAATCCATTTACTTTTTAATAGCATCGTCACTTCTGTTTCTTGTATAGAG
AAAGGATAATAATATAGCCAGCTGCCGGC